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authorAndrew Ammerlaan <andrewammerlaan@riseup.net>2021-01-19 14:41:24 +0100
committerAndrew Ammerlaan <andrewammerlaan@riseup.net>2021-01-19 14:41:24 +0100
commitfc229c83dc217788590fb1faa3341bc2182f5154 (patch)
treef0d53754ac9578567ba07ac4ef81f628a34636be
parentsci-biology/gap2caf: remove pack, upstream gone (diff)
downloadsci-fc229c83dc217788590fb1faa3341bc2182f5154.tar.gz
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sci-fc229c83dc217788590fb1faa3341bc2182f5154.zip
prfoiles/package.mask: remove mask of removed pack
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
-rw-r--r--profiles/package.mask1
-rw-r--r--sci-biology/GAL/GAL-0.2.2_p20200508.ebuild (renamed from sci-biology/GAL/GAL-0.2.2.ebuild)14
-rw-r--r--sci-biology/GAL/Manifest2
3 files changed, 9 insertions, 8 deletions
diff --git a/profiles/package.mask b/profiles/package.mask
index 79f840453..e6382d12a 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -61,4 +61,3 @@ sci-biology/eval
sci-biology/FLASH
sci-biology/fsa
sci-biology/GAL
-sci-biology/gap2caf
diff --git a/sci-biology/GAL/GAL-0.2.2.ebuild b/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild
index ac019eded..445b9eaa3 100644
--- a/sci-biology/GAL/GAL-0.2.2.ebuild
+++ b/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild
@@ -1,18 +1,19 @@
# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-inherit eutils perl-module
+inherit perl-module
+
+COMMIT="94af39622aab5ba48eb693f2327f6e90f1d202ed"
DESCRIPTION="Genome Annotation Library (incl. fasta_tool)"
-HOMEPAGE="http://www.sequenceontology.org/software/GAL.html"
-SRC_URI="http://www.sequenceontology.org/software/GAL_Code/${PN}_${PV}.tar.gz"
+HOMEPAGE="https://github.com/The-Sequence-Ontology/GAL"
+SRC_URI="https://github.com/The-Sequence-Ontology/GAL/archive/${COMMIT}.tar.gz -> ${P}.tar.gz"
LICENSE="( GPL-1+ Artistic )"
SLOT="0"
-KEYWORDS=""
-IUSE=""
+KEYWORDS="~amd64"
DEPEND="
>=dev-lang/perl-5.6.1
@@ -39,5 +40,6 @@ RDEPEND="${DEPEND}"
S="${WORKDIR}/${PN}_${PV}"
src_prepare(){
+ default
epatch "${FILESDIR}"/Build.PL.patch
}
diff --git a/sci-biology/GAL/Manifest b/sci-biology/GAL/Manifest
index 35e71f97e..4ade9c0d1 100644
--- a/sci-biology/GAL/Manifest
+++ b/sci-biology/GAL/Manifest
@@ -1 +1 @@
-DIST GAL_0.2.2.tar.gz 108786594 BLAKE2B c66a22d3623278317e9feb18938faea33bbb114df153e684bb2c6b1bf6c1c2a13c6bd3306497d80ff066fa65301fdde74e70dc33f73757e9f4bf34074e145780 SHA512 a90b396b7a703da875c2b7ad67a86f477f5b98e68353c94ab7d5876e613bfe386ba8f59d130c4f8fc62e2137742256e95ba9686c14f21b85b21d64fdc4c1be1b
+DIST GAL-0.2.2_p20200508.tar.gz 49788822 BLAKE2B 694030ad1d2963884bfdd7c25cb0df77be5ed12472c708d40a3bd1d5d837a99bf61a5cc1a2ba55a517cc90b53a896256cc4e2e875f89451af6232f3df3a90469 SHA512 cd06af20a895db2874d0f1b18e698706352968c5f60a610f73a3237ffabbd965e07d0cad4e1f6c542f4434a331a93178e49ee677393b7ca18c65e20466651058