sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS

Package-Manager: portage-2.2.0_alpha180

5 files changed, 51 insertions, 48 deletions

diff --git a/sci-biology/clover/ChangeLog b/sci-biology/clover/ChangeLog
index 18775e4df..edcb8dd7d 100644
--- a/sci-biology/clover/ChangeLog
+++ b/sci-biology/clover/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/clover
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  16 Jun 2013; Justin Lecher <jlec@gentoo.org> -clover-2010.02.19.ebuild,
+  +clover-2011.10.24.ebuild, metadata.xml:
+  Version BUmp; fixed license; respect LDFLAGS
+
 *clover-2010.02.19 (23 Aug 2010)
 
   23 Aug 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
diff --git a/sci-biology/clover/Manifest b/sci-biology/clover/Manifest
index 701b84d6e..4a3827eb9 100644
--- a/sci-biology/clover/Manifest
+++ b/sci-biology/clover/Manifest
@@ -1,2 +1,2 @@
-DIST clover-2010-02-19.tar.gz 15641 SHA256 f6de99b9ce5676af8b4179e12c4701f81f0b17ac5dadacfe7affa38ad2a585f5
-DIST jaspar2005core 14913 SHA256 498a560c67411789106b50ccdfd9bc41f571d77c2fe9bfba7e95128c0a122fe4
+DIST clover-2011-10-24.tar.gz 15843 SHA256 52ba95c118a32e6ea1097f356dfb0277be4464b834285f65eaaebcf8f504a93e SHA512 edf773943a33d58b07b7a47ca9e6c0fe08715d7f445ef1283848a14eb72d084b2113a911f23bc484b3229ec14b8eeb50d460c6b9fef89db2fa031ea059b36b93 WHIRLPOOL 785c7273c10bc6e4261e91a9dae224ff595aad3f033fb03edbe403d8cb97b456c0fe285e1a537bde3508e5e4a8f2ea5aa442fb3cb72640464df2a24da8be0ae0
+DIST jaspar2009core 54400 SHA256 a76cd1462e7b9c38f64e2049593d21fa90479b968c7997ca3d83f8489327b981 SHA512 621eac23fb0db78391d3d51471f03eccc791e1b348b23b5d9dae32b082c8301e847ee1eea4a76ac188796b639125a0970e5f0b3c0d3c673ae6f6634856c980a0 WHIRLPOOL c148ee32894ec1bd55a4665fd516eb82e6e5904e6a74bb6248d70ef7fef1a1376888a6fe53bcd959faeb8665b7c2bda3668f6801ed2e07c2c445a241a1ebcc4d
diff --git a/sci-biology/clover/clover-2010.02.19.ebuild b/sci-biology/clover/clover-2010.02.19.ebuild
deleted file mode 100644
index 239cc30e4..000000000
--- a/sci-biology/clover/clover-2010.02.19.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit toolchain-funcs versionator
-
-MY_PV=$(replace_all_version_separators '-')
-
-DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs"
-HOMEPAGE="http://zlab.bu.edu/clover/"
-SRC_URI="http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz http://zlab.bu.edu/clover/jaspar2005core"
-
-LICENSE="as-is"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86 ~amd64"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/${PN}-${MY_PV}"
-
-src_unpack() {
-	unpack ${PN}-${MY_PV}.tar.gz
-}
-
-src_compile() {
-	sed -i "s:g++:$(tc-getCXX):; s:-Wall -O3:${CFLAGS}:" Makefile || die "sed failed"
-	emake || die "emake failed"
-}
-
-src_install() {
-	dobin clover
-	dodir "/usr/share/${PN}"
-	insinto "/usr/share/${PN}"
-	doins "${DISTDIR}/jaspar2005core" || die
-}
-
-pkg_postinst() {
-	einfo "The motif library jaspar2005core has been installed in"
-	einfo "    /usr/share/clover/jaspar2005core"
-	einfo "You can pass this library to clover for motif search, or use your own library."
-}
diff --git a/sci-biology/clover/clover-2011.10.24.ebuild b/sci-biology/clover/clover-2011.10.24.ebuild
new file mode 100644
index 000000000..cfb057432
--- /dev/null
+++ b/sci-biology/clover/clover-2011.10.24.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit toolchain-funcs versionator
+
+MY_PV=$(replace_all_version_separators '-')
+
+DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs"
+HOMEPAGE="http://zlab.bu.edu/clover/"
+SRC_URI="
+	http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz
+	http://zlab.bu.edu/clover/jaspar2009core"
+
+LICENSE="freedist"
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86 ~amd64"
+
+S="${WORKDIR}/${PN}-${MY_PV}"
+
+src_prepare() {
+	sed \
+		-e "s:g++:$(tc-getCXX) \$(LDFLAGS):; s:-Wall -O3:${CFLAGS}:" \
+		-i Makefile || die "sed failed"
+}
+
+src_install() {
+	dobin clover
+	insinto /usr/share/${PN}
+	doins "${DISTDIR}/jaspar2009core"
+}
+
+pkg_postinst() {
+	einfo "The motif library jaspar2009core has been installed in"
+	einfo "    /usr/share/clover/jaspar2009core"
+	einfo "You can pass this library to clover for motif search, or use your own library."
+}
diff --git a/sci-biology/clover/metadata.xml b/sci-biology/clover/metadata.xml
index 622c9ed81..fd501d278 100644
--- a/sci-biology/clover/metadata.xml
+++ b/sci-biology/clover/metadata.xml
@@ -1,6 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-biology</herd>
-<maintainer><email>maintainer-wanted@gentoo.org</email></maintainer>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>maintainer-wanted@gentoo.org</email>
+  </maintainer>
 </pkgmetadata>