dev-java: cleanup old java packages

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

5 files changed, 0 insertions, 170 deletions

diff --git a/dev-java/htsjdk/Manifest b/dev-java/htsjdk/Manifest
deleted file mode 100644
index ee5ea5e79..000000000
--- a/dev-java/htsjdk/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST htsjdk-2.19.0.tar.gz 15602200 BLAKE2B eee9e4cbed27122020b7ec9de50c301c3078cc995a9aa6f89061518f9fab823054759dc17c16fb71da231b7e19876743146116ee7398af04a8e65b7781c62924 SHA512 07af3f5a592ab519349bd8a47dc336fe8673232daeb1d4c1a120dd4dde1c42db443998948185e2b18f27a5ac578b0afa0d7d09b36a66f69eba156ac0912d96b5
-DIST htsjdk-2.3.0.tar.gz 11466439 BLAKE2B 5bdfb89f99767335c3e3e45b43a237d8e050c68f02f4816d9cb23d2fce78ec133a1c29ea297eba0224ec11a162d2b40b3ea486d834488b4369d24931fbcb72b6 SHA512 43029b59c039accd5ae5d7631d72a11bfab80c38fcbfb3fa02e9bc9e9b795ca86f048a34a7182325c4d7123a82d2b6c5094e11f7118c09fca222b3b2327f6249
diff --git a/dev-java/htsjdk/htsjdk-2.19.0.ebuild b/dev-java/htsjdk/htsjdk-2.19.0.ebuild
deleted file mode 100644
index 349e56673..000000000
--- a/dev-java/htsjdk/htsjdk-2.19.0.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-JAVA_PKG_IUSE="doc source"
-
-inherit java-pkg-2 java-ant-2
-
-DESCRIPTION="Java API for high-throughput sequencing data (HTS) formats"
-HOMEPAGE="https://samtools.github.io/htsjdk/"
-SRC_URI="https://github.com/samtools/htsjdk/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS=""
-
-CDEPEND="dev-java/commons-jexl:2
-	dev-java/commons-compress:0
-	dev-java/commons-logging:0
-	dev-java/gradle-bin:*"
-
-DEPEND=">=virtual/jdk-1.8
-	${CDEPEND}"
-RDEPEND=">=virtual/jre-1.8
-	${CDEPEND}"
-
-EANT_BUILD_TARGET="all"
-EANT_NEEDS_TOOLS="true"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_GENTOO_CLASSPATH="commons-jexl-2,commons-compress,commons-logging"
-
-java_prepare(){
-	default
-}
-
-src_compile(){
-	# work around gradle writing $HOME/.gradle and $HOME/.git
-	# https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965
-	GRADLE_USER_HOME="${WORKDIR}" ./gradlew build || die
-}
-
-src_install() {
-	cd dist || die
-
-	for i in *.jar; do
-		java-pkg_newjar $i ${i/-[0-9]*.jar/.jar}
-	done
-
-	use source && java-pkg_dosrc "${S}"/src/java/*
-	use doc && java-pkg_dojavadoc "${S}"/javadoc
-}
diff --git a/dev-java/htsjdk/htsjdk-2.3.0.ebuild b/dev-java/htsjdk/htsjdk-2.3.0.ebuild
deleted file mode 100644
index c94f79781..000000000
--- a/dev-java/htsjdk/htsjdk-2.3.0.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-JAVA_PKG_IUSE="doc source"
-
-inherit java-pkg-2 java-ant-2
-
-DESCRIPTION="Java API for high-throughput sequencing data (HTS) formats"
-HOMEPAGE="https://samtools.github.io/htsjdk/"
-SRC_URI="https://github.com/samtools/htsjdk/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-CDEPEND="dev-java/commons-jexl:2
-	dev-java/commons-compress:0
-	dev-java/commons-logging:0"
-
-DEPEND=">=virtual/jdk-1.8
-	${CDEPEND}"
-RDEPEND=">=virtual/jre-1.8
-	${CDEPEND}"
-
-EANT_BUILD_TARGET="all"
-EANT_NEEDS_TOOLS="true"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_GENTOO_CLASSPATH="commons-jexl-2,commons-compress,commons-logging"
-
-java_prepare() {
-	default
-	rm -v lib/{commons-compress,commons-jexl,commons-logging}*.jar || die
-}
-
-src_install() {
-	cd dist || die
-
-	for i in *.jar; do
-		java-pkg_newjar $i ${i/-[0-9]*.jar/.jar}
-	done
-
-	use source && java-pkg_dosrc "${S}"/src/java/*
-	use doc && java-pkg_dojavadoc "${S}"/javadoc
-}
diff --git a/dev-java/htsjdk/htsjdk-9999.ebuild b/dev-java/htsjdk/htsjdk-9999.ebuild
deleted file mode 100644
index 2123bbc55..000000000
--- a/dev-java/htsjdk/htsjdk-9999.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-JAVA_PKG_IUSE="doc source"
-
-inherit git-r3 java-pkg-2 java-ant-2
-
-DESCRIPTION="Java API for high-throughput sequencing data (HTS) formats"
-HOMEPAGE="https://samtools.github.io/htsjdk/"
-EGIT_REPO_URI="https://github.com/samtools/htsjdk.git"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS=""
-
-CDEPEND="dev-java/commons-jexl:2
-	dev-java/commons-compress:0
-	dev-java/commons-logging:0
-	dev-java/gradle-bin:*"
-
-DEPEND=">=virtual/jdk-1.8
-	${CDEPEND}"
-RDEPEND=">=virtual/jre-1.8
-	${CDEPEND}"
-
-EANT_BUILD_TARGET="all"
-EANT_NEEDS_TOOLS="true"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_GENTOO_CLASSPATH="commons-jexl-2,commons-compress,commons-logging"
-
-java_prepare(){
-	default
-}
-
-src_compile(){
-	# work around gradle writing $HOME/.gradle and $HOME/.git
-	# https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965
-	GRADLE_USER_HOME="${WORKDIR}" ./gradlew || die
-}
-
-src_install() {
-	cd build/libs || die
-
-	#for i in *-SNAPSHOT.jar; do
-	#	java-pkg_newjar $i ${i/-[0-9]*.jar/.jar}
-	#done
-	java-pkg_newjar "${S}"/build/libs/*-SNAPSHOT.jar htsjdk.jar
-	use source && java-pkg_dosrc "${S}"/build/libs/*-sources.jar
-	use doc && java-pkg_dojavadoc "${S}"/build/libs/*-javadoc.jar
-}
diff --git a/dev-java/htsjdk/metadata.xml b/dev-java/htsjdk/metadata.xml
deleted file mode 100644
index e18a4898a..000000000
--- a/dev-java/htsjdk/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>ercpe@gentoo.org</email>
-		<name>Johann Schmitz (ercpe)</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="github">samtools/htsjdk</remote-id>
-	</upstream>
-</pkgmetadata>