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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-03-23 20:33:34 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-03-23 20:33:34 +0100 |
| commit | 05b20520d7eb65ba90e9582b7315c65d2f4234c1 (patch) | |
| tree | 77a132d8828cb200aaedb4a313aa8046e39b83a5 /sci-biology/BBmap | |
| parent | sci-biology/jtreeview: a skeleton for a new package, needs help from java tea... (diff) | |
| download | sci-05b20520d7eb65ba90e9582b7315c65d2f4234c1.tar.gz sci-05b20520d7eb65ba90e9582b7315c65d2f4234c1.tar.bz2 sci-05b20520d7eb65ba90e9582b7315c65d2f4234c1.zip | |
sci-biology/BBmap: a skeleton for a new package, needs help from java team for sure
Diffstat (limited to 'sci-biology/BBmap')
| -rw-r--r-- | sci-biology/BBmap/BBmap-31.40.ebuild | 25 | ||||
| -rw-r--r-- | sci-biology/BBmap/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-biology/BBmap/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/BBmap/metadata.xml | 9 |
4 files changed, 46 insertions, 0 deletions
diff --git a/sci-biology/BBmap/BBmap-31.40.ebuild b/sci-biology/BBmap/BBmap-31.40.ebuild new file mode 100644 index 000000000..959d062b5 --- /dev/null +++ b/sci-biology/BBmap/BBmap-31.40.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit java-pkg-2 java-ant-2 + +DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/FASTQ conversion" +HOMEPAGE="http://sourceforge.net/projects/bbmap/" +SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java7.tar.gz" +#SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java6.tar.gz" + +LICENSE="" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + >=virtual/jdk-1.7 + dev-java/ant-core" +RDEPEND="${DEPEND} + >=virtual/jre-1.7" + +S="${WORKDIR}"/bbmap diff --git a/sci-biology/BBmap/ChangeLog b/sci-biology/BBmap/ChangeLog new file mode 100644 index 000000000..9a2750a95 --- /dev/null +++ b/sci-biology/BBmap/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for sci-biology/BBmap +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*BBmap-31.40 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +BBmap-31.40.ebuild, +metadata.xml: + sci-biology/BBmap: a skeleton for a new package, needs help from java team + for sure + diff --git a/sci-biology/BBmap/Manifest b/sci-biology/BBmap/Manifest new file mode 100644 index 000000000..f1826f34f --- /dev/null +++ b/sci-biology/BBmap/Manifest @@ -0,0 +1 @@ +DIST BBMap_31.40_java7.tar.gz 2971946 SHA256 f2ddbea680d9364b41245ff00f26c020ad7b7286080efcfab0e9f4bc187b64dc SHA512 609cc8600fbb4e6de82cd239dea66761daab0097fdb90ec6d04b11e49bc2eaa576c8102d140de7fb971aa1eb8629193cc44177802d71544bd1d3fc775bdfdb8e WHIRLPOOL 30beb865a98474bac7221b79109468738cc802df029dfffb4ccf04742dcf5770a3f1307792db5f3dea76c07940f540ec7331a28c9ef03031548d03e7d22c8187 diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/BBmap/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |