diff options
| author |   Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2022-01-25 10:55:06 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2022-01-25 10:55:06 +0100 |
| commit | 19eb71e9e2cc023a547e9ca34c246d0266dcbcf2 (patch) | |
| tree | 7553ba9e4a6a6bddf0d178cbdd8252d7ff350dab /sci-biology/GAL | |
| parent | sci-biology/vcflib: bump to 1.0.3 (diff) | |
| download | sci-19eb71e9e2cc023a547e9ca34c246d0266dcbcf2.tar.gz sci-19eb71e9e2cc023a547e9ca34c246d0266dcbcf2.tar.bz2 sci-19eb71e9e2cc023a547e9ca34c246d0266dcbcf2.zip | |
sci-biology/GAL: fix install
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Diffstat (limited to 'sci-biology/GAL')
| -rw-r--r-- | sci-biology/GAL/GAL-0.2.2_p20200508.ebuild | 19 | ||||
| -rw-r--r-- | sci-biology/GAL/files/Build.PL.patch | 24 |
2 files changed, 21 insertions, 22 deletions
diff --git a/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild b/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild index 1aa7e99be..f02907368 100644 --- a/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild +++ b/sci-biology/GAL/GAL-0.2.2_p20200508.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 inherit perl-module @@ -10,16 +10,15 @@ COMMIT="94af39622aab5ba48eb693f2327f6e90f1d202ed" DESCRIPTION="Genome Annotation Library (incl. fasta_tool)" HOMEPAGE="https://github.com/The-Sequence-Ontology/GAL" SRC_URI="https://github.com/The-Sequence-Ontology/GAL/archive/${COMMIT}.tar.gz -> ${P}.tar.gz" +S="${WORKDIR}/${PN}-${COMMIT}" LICENSE="( GPL-1+ Artistic )" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64" RESTRICT="test" DEPEND=" - >=dev-lang/perl-5.6.1 - dev-perl/Module-Build dev-perl/Config-Std virtual/perl-Data-Dumper dev-perl/Data-Types @@ -29,6 +28,7 @@ DEPEND=" dev-perl/Number-Format virtual/perl-Scalar-List-Utils dev-perl/Set-IntSpan-Fast + dev-perl/Statistics-Descriptive dev-perl/Statistics-Descriptive-Discrete dev-perl/Template-Toolkit dev-perl/Text-Graph @@ -36,7 +36,12 @@ DEPEND=" dev-perl/Text-Table dev-perl/Exception-Class dev-perl/Test-Warn - dev-perl/URI" + dev-perl/URI + sci-biology/fasta +" RDEPEND="${DEPEND}" +BDEPEND="dev-perl/Module-Build" -S="${WORKDIR}/${PN}-${COMMIT}" +PATCHES=( + "${FILESDIR}/Build.PL.patch" +) diff --git a/sci-biology/GAL/files/Build.PL.patch b/sci-biology/GAL/files/Build.PL.patch index 6d881f249..eee4fb60d 100644 --- a/sci-biology/GAL/files/Build.PL.patch +++ b/sci-biology/GAL/files/Build.PL.patch @@ -1,16 +1,11 @@ -diff -ruN GAL_0.2.2.orig/Build.PL GAL_0.2.2/Build.PL ---- GAL_0.2.2.orig/Build.PL 2014-01-30 01:35:11.000000000 +0100 -+++ GAL_0.2.2/Build.PL 2016-01-02 12:09:16.212623256 +0100 -@@ -6,26 +6,6 @@ - my $class = Module::Build->subclass - ( - class => 'Module::Build::Custom', -- code => q{ -- sub ACTION_build { -- my $self = shift; -- $self->SUPER::ACTION_build; -- $self->dispatch('installdeps'); -- } +diff --git a/Build.PL b/Build.PL +index 5915ca8..61eceb3 100644 +--- a/Build.PL ++++ b/Build.PL +@@ -12,19 +12,6 @@ my $class = Module::Build->subclass + $self->SUPER::ACTION_build; + $self->dispatch('installdeps'); + } - sub ACTION_install { - my $self = shift; - print "\n\nGAL does not do a system wide install\n\n"; @@ -24,7 +19,6 @@ diff -ruN GAL_0.2.2.orig/Build.PL GAL_0.2.2/Build.PL - print "remove the entire subroutine (ACTION_install) where this message\n"; - print "is printed run Build realclean and re-install.\n\n"; - } -- }, + }, ); - my $builder = $class->new( |