aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorAndrew Ammerlaan <andrewammerlaan@riseup.net>2021-01-10 13:26:03 +0100
committerAndrew Ammerlaan <andrewammerlaan@riseup.net>2021-01-10 13:26:03 +0100
commit17cc39e9b9a19c26914d5afcd824fab963069d1f (patch)
treeb67f82dce8ecca665d274c9adefe295404c9bc31 /sci-biology/NGSEPcore-bin
parentsci-biology/NGSEPcore-bin: add version 4.0.3 (diff)
downloadsci-17cc39e9b9a19c26914d5afcd824fab963069d1f.tar.gz
sci-17cc39e9b9a19c26914d5afcd824fab963069d1f.tar.bz2
sci-17cc39e9b9a19c26914d5afcd824fab963069d1f.zip
sci-biology/NGSEPcore-bin: remove old
Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/NGSEPcore-bin')
-rw-r--r--sci-biology/NGSEPcore-bin/Manifest4
-rw-r--r--sci-biology/NGSEPcore-bin/NGSEPcore-bin-3.3.1.ebuild37
2 files changed, 0 insertions, 41 deletions
diff --git a/sci-biology/NGSEPcore-bin/Manifest b/sci-biology/NGSEPcore-bin/Manifest
index a97a76345..282ee5abc 100644
--- a/sci-biology/NGSEPcore-bin/Manifest
+++ b/sci-biology/NGSEPcore-bin/Manifest
@@ -1,8 +1,4 @@
-DIST NGSEPcore-bin-3.3.1_QuickStart.txt 23701 BLAKE2B 0b3433a771e0121d4f38362f331e87c2597b7cbca4b63f26504807b2a84de2a3636e711c6bdee86c575810d6aff44996cb75663739ff5e184542f7f598f546be SHA512 d1eff40ca54a1e9bbdbda59511eb9e63ace2b001024df4119f0751b2e00dcf9219eb2eaa6407b2ccd1df71cf93d9b8e39088a59b7a6200fd966502c1b680eedd
-DIST NGSEPcore-bin-3.3.1_Tutorial.txt 17070 BLAKE2B 9af46173da8cb1b1746118d186da0794c0b9ad11d22109bdf96ed9df6d21df2495e8be3e5e75ef013a11922aa697ceb85ee280199eebbb2afadc180d3d86c0a6 SHA512 844138e0be2038d3f4656a55a8129819f08361cb6447a7fdb261b48c1f50e7aad1234079cbb01746bc7084d59c79589538883ecc0b0bb4bd8e07f61861ef80c1
-DIST NGSEPcore-bin-3.3.1_UserManual.pdf 29071950 BLAKE2B fd16b44e3668f61013772965378bf4fa604b2467839810392d26a27e1a6e52f961cecc5097728bb67d10b68556bd406ec044b439c5ad1b3e614bfc7866afed43 SHA512 6d697f6945bdecb4f30712d3ae94615c85180a53750ba92357f81bf060b3f5bec3f6d1a03115c1a3791f5bf050b115cd09fd8729d885d4ec34b10024082ebb3c
DIST NGSEPcore-bin-4.0.3_QuickStart.txt 21313 BLAKE2B b897e25945d337f85f0c525ce93221440f6f1577ad1bde6fa3884a74e4366c2e17d7ef1d8603acba02ab21bdaa63fdfcc4d4251273f5e77b938e2318b13bdc19 SHA512 f5d528555c6115cdbddddbfc1c24939d1ca4776b16a5b848b4b9321cb882903d70eeef00c08e032dce4b6fe5551cea881570fc6f5975837e4f9eaf646de0c363
DIST NGSEPcore-bin-4.0.3_Tutorial.txt 16946 BLAKE2B 0f397c6cd6d0f57f219d3f7963df32263347345a2e6231c7ccbc1a433d8de6350c6653e1a260182aa3ea5fa6a0bf88f47b659df236c78c8289914823b92f5778 SHA512 b110a0058962e1dc899183d3ca73cdfdd5f9b729561d35fe8d25e2fbeaa9b4647cbb768b047fa6df80b7926b1a34e4dc87c13979b66e6e6fe83f6f0c991fe6a8
DIST NGSEPcore-bin-4.0.3_UserManual.pdf 10516580 BLAKE2B abe69a790413851181cbd210c8389fd302d917a1f6b4d425fbda2389808234290d38f31532933c0fc8505ca8b530f1b778bb58ce041783d184a85c2d5a716cd9 SHA512 cff9176f0a791b5b3e24fdba681bd71a3c39cb4593c01631e722e60e238140c80f292286454b7337a741a2f54fa6d5db30146c5bfdb02d5d5dd8d65322e3dc6e
-DIST NGSEPcore_3.3.1.jar 2288599 BLAKE2B 16e1754349d312c9172b80d264e480835f9784452ed022d39931756d650971247781abee179afe9b73cef6413ab0604c7232b38c65b0ad98d0d5f60a02cc7e91 SHA512 4bb938b0b22f77703d8567f3e95b2dd1df6d56edae522521cada8b72e9cd6ac265b30c70f3c480107aa17210b9d5b8e43a14617137bb3f1333c1ce70f5cc5439
DIST NGSEPcore_4.0.3.jar 3122004 BLAKE2B 363ecc94cb8b3afb55c360b1479705a048de062d0200db183b25ed36c675e95cc9d4337826e207ff5513be07f4e61e919e2bd1edb579332e38673f363e833dde SHA512 856db7958f1bed5c41f29dd5ee4bc275032edabc1b7d75f61063236d77713716f7f946b6d93eeef8322f12e64ea808e509fac5517eb5d964a330e93df253bca5
diff --git a/sci-biology/NGSEPcore-bin/NGSEPcore-bin-3.3.1.ebuild b/sci-biology/NGSEPcore-bin/NGSEPcore-bin-3.3.1.ebuild
deleted file mode 100644
index 8758da3ac..000000000
--- a/sci-biology/NGSEPcore-bin/NGSEPcore-bin-3.3.1.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit java-pkg-2 java-ant-2
-
-DESCRIPTION="NGSEP (CNV and indel discovery)"
-HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home
- https://github.com/NGSEP/NGSEPcore"
-SRC_URI="https://sourceforge.net/projects/ngsep/files/Library/NGSEPcore_3.3.1.jar
- https://sourceforge.net/projects/ngsep/files/training/UserManualNGSEP_V330.pdf -> ${P}_UserManual.pdf
- https://sourceforge.net/projects/ngsep/files/training/Tutorial.txt -> ${P}_Tutorial.txt
- https://sourceforge.net/projects/ngsep/files/training/QuickStart.txt -> ${P}_QuickStart.txt"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
- dev-java/htsjdk"
-# dev-java/jsci-bin
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"
-
-src_unpack(){
- echo
-}
-
-src_install(){
- java-pkg_dojar "${DISTDIR}"/*.jar
- dodoc "${DISTDIR}"/${P}_UserManual.pdf \
- "${DISTDIR}"/${P}_Tutorial.txt \
- "${DISTDIR}"/${P}_QuickStart.txt
-}