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| author |   Justin Lecher <jlec@gentoo.org> | 2017-01-29 13:44:25 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2017-01-29 13:44:25 +0000 |
| commit | c38274779a20385ad70d5c2aa2dac34d8525868d (patch) | |
| tree | 3c1dfaacb3e677a5e15eb0ba58c6492776a47c00 /sci-biology/SEECER/SEECER-0.1.3-r2.ebuild | |
| parent | sci-biology/Atlas2: Add missing slot operator (diff) | |
| download | sci-c38274779a20385ad70d5c2aa2dac34d8525868d.tar.gz sci-c38274779a20385ad70d5c2aa2dac34d8525868d.tar.bz2 sci-c38274779a20385ad70d5c2aa2dac34d8525868d.zip | |
sci-biology/SEECER: QA fixes
Bump to6 EAPI
drop non active code
add missing slot operator
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-biology/SEECER/SEECER-0.1.3-r2.ebuild')
| -rw-r--r-- | sci-biology/SEECER/SEECER-0.1.3-r2.ebuild | 23 |
1 files changed, 11 insertions, 12 deletions
diff --git a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild index 8d8e91972..f2b5a67a4 100644 --- a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild +++ b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild @@ -1,41 +1,40 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 inherit eutils DESCRIPTION="SEquencing Error Corrector for RNA-Seq reads" HOMEPAGE="http://sb.cs.cmu.edu/seecer/" -if [ "$PV" == "9999" ]; then - EGIT_REPO_URI="https://github.com/haisonle/SEECER.git" - KEYWORDS="" -else - SRC_URI=" +SRC_URI=" http://sb.cs.cmu.edu/seecer/downloads/"${P}".tar.gz http://sb.cs.cmu.edu/seecer/downloads/manual.pdf -> "${PN}"-manual.pdf" - KEYWORDS="~amd64" -fi LICENSE="GPL-3" SLOT="0" IUSE="" +KEYWORDS="~amd64" # although has bundled jellyfish-1.1.11 copy it just calls the executable during runtime # seems jellyfish-2 does not accept same commandline arguments DEPEND=" - sci-libs/gsl - sci-biology/seqan" + sci-libs/gsl:0= + sci-biology/seqan:0=" RDEPEND="${DEPEND} =sci-biology/jellyfish-1.1.11" S="${S}"/SEECER +PATCHES=( + "${FILESDIR}"/remove-hardcoded-paths.patch +) + src_prepare(){ # http://seecer-rna-read-error-correction-mailing-list.21961.x6.nabble.com/Segmentation-fault-in-step-4-td41.html cp -p "${FILESDIR}"/replace_ids.cc "${S}"/src/ || die - epatch "${FILESDIR}"/remove-hardcoded-paths.patch + default } src_install(){ |