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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-04-21 21:07:06 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-04-21 21:14:06 +0200 |
| commit | 2778b51209c924509c1dfcdf68d505b78f7654a1 (patch) | |
| tree | 8a61ba3c1b6c73229e1e589b24016cd30c592010 /sci-biology/SEECER | |
| parent | sci-biology/trinityrnaseq: rename patch filename (diff) | |
| download | sci-2778b51209c924509c1dfcdf68d505b78f7654a1.tar.gz sci-2778b51209c924509c1dfcdf68d505b78f7654a1.tar.bz2 sci-2778b51209c924509c1dfcdf68d505b78f7654a1.zip | |
sci-biology/jellyfish: SLOT jellyfish to support concurrent ver. {1,2}
This renames the resulting binaries, pkg-config file contents, headers, and all
packages currently depending on sci-biology/jellyfish.
sci-biology/quorum: SLOT jellyfish to support concurrent ver. {1,2}
sci-biology/Rcorrector: SLOT jellyfish to support concurrent ver. {1,2}
sci-biology/SEECER: SLOT jellyfish to support concurrent ver. {1,2}
sci-biology/amos: SLOT jellyfish to support concurrent ver. {1,2}
sci-biology/kraken: SLOT jellyfish to support concurrent ver. {1,2}
sci-biology/wgs-assembler: SLOT jellyfish to support concurrent ver. {1,2}
Package-Manager: Portage-2.3.28, Repoman-2.3.9
Diffstat (limited to 'sci-biology/SEECER')
| -rw-r--r-- | sci-biology/SEECER/SEECER-0.1.3-r2.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/SEECER/files/remove-hardcoded-paths.patch | 2 | ||||
| -rw-r--r-- | sci-biology/SEECER/files/rename_jellyfish_binary.patch | 2 |
3 files changed, 4 insertions, 4 deletions
diff --git a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild index 0b7ec3bfa..49ebd3879 100644 --- a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild +++ b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -22,7 +22,7 @@ DEPEND=" sci-libs/gsl:0= sci-biology/seqan:0=" RDEPEND="${DEPEND} - =sci-biology/jellyfish-1.1.11-r1" + sci-biology/jellyfish:1" S="${S}"/SEECER diff --git a/sci-biology/SEECER/files/remove-hardcoded-paths.patch b/sci-biology/SEECER/files/remove-hardcoded-paths.patch index bb46f6a30..6583ee47d 100644 --- a/sci-biology/SEECER/files/remove-hardcoded-paths.patch +++ b/sci-biology/SEECER/files/remove-hardcoded-paths.patch @@ -42,7 +42,7 @@ -BINDIR='bin/' #this can be hardcoded to /absolute/path/to/SEECER/bin/ -JF="../jellyfish-1.1.11/bin/jellyfish" #this may be hardcoded to /absolute/path/to/jellyfish/bin/ +BINDIR='' #this can be hardcoded to /absolute/path/to/SEECER/bin/ -+JF="jellyfish" #this may be hardcoded to /absolute/path/to/jellyfish/bin/ ++JF="jellyfish1" #this may be hardcoded to /absolute/path/to/jellyfish/bin/ K=17 SEECER_PARAMS="" diff --git a/sci-biology/SEECER/files/rename_jellyfish_binary.patch b/sci-biology/SEECER/files/rename_jellyfish_binary.patch index c6548cee1..d4fd3b0a7 100644 --- a/sci-biology/SEECER/files/rename_jellyfish_binary.patch +++ b/sci-biology/SEECER/files/rename_jellyfish_binary.patch @@ -4,7 +4,7 @@ BINDIR='' #this can be hardcoded to /absolute/path/to/SEECER/bin/ --JF="jellyfish" #this may be hardcoded to /absolute/path/to/jellyfish/bin/ +-JF="jellyfish1" #this may be hardcoded to /absolute/path/to/jellyfish/bin/ +JF="jellyfish1" #this may be hardcoded to /absolute/path/to/jellyfish/bin/jellyfish K=17 |