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| author |   Horea Christian <chr@chymera.eu> | 2024-01-22 08:01:18 -0500 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2024-01-22 08:01:18 -0500 |
| commit | aea1a69a5dae783cccfe1d3f513e5d090188a279 (patch) | |
| tree | 68a1cde26e0e6c1873ad6f0f9321fdd2e673b57d /sci-biology/SPAdes/SPAdes-3.15.5.ebuild | |
| parent | sci-biology/SPAdes: unkeyword 3.15.3 for ~amd64 (diff) | |
| download | sci-aea1a69a5dae783cccfe1d3f513e5d090188a279.tar.gz sci-aea1a69a5dae783cccfe1d3f513e5d090188a279.tar.bz2 sci-aea1a69a5dae783cccfe1d3f513e5d090188a279.zip | |
sci-biology/SPAdes: add 3.15.5
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology/SPAdes/SPAdes-3.15.5.ebuild')
| -rw-r--r-- | sci-biology/SPAdes/SPAdes-3.15.5.ebuild | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/sci-biology/SPAdes/SPAdes-3.15.5.ebuild b/sci-biology/SPAdes/SPAdes-3.15.5.ebuild new file mode 100644 index 000000000..b6d344c37 --- /dev/null +++ b/sci-biology/SPAdes/SPAdes-3.15.5.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..12} ) +inherit python-single-r1 + +DESCRIPTION="De novo de Bruijn genome assembler overcoming uneven coverage" +HOMEPAGE="https://cab.spbu.ru/software/spades" +SRC_URI=" + https://github.com/ablab/spades/releases/download/v${PV}/${P}.tar.gz + https://cab.spbu.ru/files/release${PV}/manual.html -> ${P}_manual.html + https://cab.spbu.ru/files/release${PV}/rnaspades_manual.html -> ${P}_rnaspades_manual.html + https://cab.spbu.ru/files/release${PV}/truspades_manual.html -> ${P}_truspades_manual.html +" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="" +# Fails to build: +# https://github.com/ablab/spades/issues/1238 +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +DEPEND=" + sys-libs/zlib + app-arch/bzip2 + dev-python/regex + ${PYTHON_DEPS} +" +RDEPEND="${DEPEND}" +BDEPEND="dev-build/cmake" + +src_install(){ + einstalldocs + # WORKAROUND: This script does both compile and install in one go + PREFIX="${ED}"/usr ./spades_compile.sh || die +} |