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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-11-15 19:40:41 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-11-15 19:40:41 +0100 |
| commit | 64099144869185dbb9655948fcc71a1955b12a4a (patch) | |
| tree | 4b5e5c402acefb2f9a113c723e1cd1c6c4acba63 /sci-biology/VarScan-bin | |
| parent | sci-biology/VarScan: remove a package skeleton, no sources available (diff) | |
| download | sci-64099144869185dbb9655948fcc71a1955b12a4a.tar.gz sci-64099144869185dbb9655948fcc71a1955b12a4a.tar.bz2 sci-64099144869185dbb9655948fcc71a1955b12a4a.zip | |
sci-biology/VarScan-bin: use upstream binaries
Package-Manager: portage-2.3.2
Diffstat (limited to 'sci-biology/VarScan-bin')
| -rw-r--r-- | sci-biology/VarScan-bin/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/VarScan-bin/VarScan-bin-2.4.2.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/VarScan-bin/metadata.xml | 11 |
3 files changed, 44 insertions, 0 deletions
diff --git a/sci-biology/VarScan-bin/Manifest b/sci-biology/VarScan-bin/Manifest new file mode 100644 index 000000000..efdc31df9 --- /dev/null +++ b/sci-biology/VarScan-bin/Manifest @@ -0,0 +1 @@ +DIST VarScan.v2.4.2.jar 114840 SHA256 34ff6462f91fb6ed3f11e867ab4a179efae5dd8214b97fa261fc616f23d4d031 SHA512 a58c35412a3fb5a3750a4f3fea834e92bde3e0b98c6bbf48e677589a3d99dcd82a01d864ab0c5d19d2089cad1174ea9f70c8081fbc02fddfb3723c8c9af6de68 WHIRLPOOL adf7f4a149010a438438fb5c51a2ffa45709d22d72b94053803eb8d4e2341a4eebc3e9db5a6d7e9c175b691e8c72201fe30f0c995a94802603492b569b091a92 diff --git a/sci-biology/VarScan-bin/VarScan-bin-2.4.2.ebuild b/sci-biology/VarScan-bin/VarScan-bin-2.4.2.ebuild new file mode 100644 index 000000000..c11a04ab3 --- /dev/null +++ b/sci-biology/VarScan-bin/VarScan-bin-2.4.2.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit java-pkg-2 + +MY_PN="VarScan" +DESCRIPTION="Variant detection (germline, multi-sample, somatic mut., CNA), SNP" +HOMEPAGE="http://dkoboldt.github.io/varscan" + +# binary +#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar +#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar" +SRC_URI="https://github.com/dkoboldt/varscan/blob/master/${MY_PN}.v${PV}.jar?raw=true -> ${MY_PN}.v${PV}.jar" + +LICENSE="Non-profit-OSL-3.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + >=virtual/jdk-1.5:*" +RDEPEND=">=virtual/jre-1.5:*" + +S="${WORKDIR}"/net/sf/varscan + +src_install(){ + java-pkg_newjar "${DISTDIR}"/${MY_PN}.v${PV}.jar ${MY_PN}.jar + java-pkg_dolauncher VarScan +} diff --git a/sci-biology/VarScan-bin/metadata.xml b/sci-biology/VarScan-bin/metadata.xml new file mode 100644 index 000000000..fae01f1fa --- /dev/null +++ b/sci-biology/VarScan-bin/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci@gentoo.org</email> + <name>Gentoo Science Project</name> + </maintainer> + <upstream> + <remote-id type="sourceforge">varscan</remote-id> + </upstream> +</pkgmetadata> |