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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-11-15 20:13:13 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-11-15 20:13:13 +0100 |
| commit | bee1add2f405f7e728e35c473d6cc85acd05e0e6 (patch) | |
| tree | f7fcf93acfd12dfa2cab3ef04e637b60dca8fdd7 /sci-biology/VarScan/VarScan-2.4.2.ebuild | |
| parent | Revert "sci-biology/VarScan: remove a package skeleton, no sources available" (diff) | |
| download | sci-bee1add2f405f7e728e35c473d6cc85acd05e0e6.tar.gz sci-bee1add2f405f7e728e35c473d6cc85acd05e0e6.tar.bz2 sci-bee1add2f405f7e728e35c473d6cc85acd05e0e6.zip | |
sci-biology/VarScan: install upstream jar with *.java and *.class files
Package-Manager: portage-2.3.2
Diffstat (limited to 'sci-biology/VarScan/VarScan-2.4.2.ebuild')
| -rw-r--r-- | sci-biology/VarScan/VarScan-2.4.2.ebuild | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/sci-biology/VarScan/VarScan-2.4.2.ebuild b/sci-biology/VarScan/VarScan-2.4.2.ebuild new file mode 100644 index 000000000..63eb84a09 --- /dev/null +++ b/sci-biology/VarScan/VarScan-2.4.2.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit java-pkg-2 + +DESCRIPTION="Variant detection (germline, multi-sample, somatic mutations, CNA, SNP calls)" +HOMEPAGE="http://varscan.sourceforge.net/" + +# binary +#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar +#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar" +SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.source.jar" + +LICENSE="Non-profit-OSL-3.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + >=virtual/jdk-1.5:* + !sci-biology/VarScan-bin" +RDEPEND=">=virtual/jre-1.5:*" + +S="${WORKDIR}"/net/sf/varscan + +src_compile(){ + javac *.java +} + +src_install(){ + java-pkg_newjar "${DISTDIR}"/${PN}.v${PV}.source.jar ${PN}.source.jar + java-pkg_dolauncher VarScan +} |