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| author |   Justin Lecher <jlec@gentoo.org> | 2016-02-14 18:32:26 +0100 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2016-02-14 18:32:35 +0100 |
| commit | 10febb5681bdc497d34f2c58667e31124437fa65 (patch) | |
| tree | d35d64dac8ed2eae2454589b55f2cb79499bc6dd /sci-biology/angsd | |
| parent | sci-biology/StarORF: Bump to EAPI=6 (diff) | |
| download | sci-10febb5681bdc497d34f2c58667e31124437fa65.tar.gz sci-10febb5681bdc497d34f2c58667e31124437fa65.tar.bz2 sci-10febb5681bdc497d34f2c58667e31124437fa65.zip | |
sci-biology/angsd: Bump to EAPI=6
* Use git-r3.eclass
Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-biology/angsd')
| -rw-r--r-- | sci-biology/angsd/angsd-9999.ebuild | 41 | ||||
| -rw-r--r-- | sci-biology/angsd/metadata.xml | 2 |
2 files changed, 22 insertions, 21 deletions
diff --git a/sci-biology/angsd/angsd-9999.ebuild b/sci-biology/angsd/angsd-9999.ebuild index e4c2be65a..0de57d45d 100644 --- a/sci-biology/angsd/angsd-9999.ebuild +++ b/sci-biology/angsd/angsd-9999.ebuild @@ -1,40 +1,39 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 -inherit git-2 - -[ "$PV" == "9999" ] && inherit git-2 +inherit git-r3 DESCRIPTION="Population genetics analysis package" HOMEPAGE="http://www.popgen.dk/angsd" -if [ "$PV" == "9999" ]; then - EGIT_REPO_URI="https://github.com/ANGSD/angsd.git" - KEYWORDS="" -else - EGIT_REPO_URI="https://github.com/ANGSD/angsd.git" - EGIT_BRANCH="0.700" - KEYWORDS="" -fi +EGIT_REPO_URI="https://github.com/ANGSD/angsd.git" LICENSE="GPL-2" SLOT="0" +KEYWORDS="" IUSE="" -DEPEND="dev-lang/R +DEPEND=" + dev-lang/R sci-libs/htslib" RDEPEND="${DEPEND}" # https://github.com/ANGSD/angsd/issues/9 src_prepare(){ - sed -e 's@FLAGS=-O3@FLAGS=@' \ + sed \ + -e 's@FLAGS=-O3@FLAGS=@' \ + -e 's@HTSLIB = .*@HTSLIB = -lhts@' \ + -e 's@all: htshook angsd misc@all: angsd misc@' \ + -i Makefile || die + sed \ -e 's@HTSLIB = .*@HTSLIB = -lhts@' \ - -e 's@all: htshook angsd misc@all: angsd misc@' -i Makefile || die - sed -e 's@HTSLIB = .*@HTSLIB = -lhts@' \ - -e 's@HTSDIR = .*@HTSDIR = /usr/include@' -i misc/Makefile || die - sed -e 's@include "../htslib/bgzf.h@include "bgzf.h@' -i misc/thetaStat.cpp || die + -e 's@HTSDIR = .*@HTSDIR = /usr/include@' \ + -i misc/Makefile || die + sed \ + -e 's@include "../htslib/bgzf.h@include "bgzf.h@' \ + -i misc/thetaStat.cpp || die } src_compile(){ @@ -45,5 +44,7 @@ src_install(){ dobin angsd dodoc README.md cd misc || die - dobin supersim thetaStat realSFS emOptim2 msToGlf smartCount printIcounts splitgl contamination NGSadmix + dobin \ + supersim thetaStat realSFS emOptim2 msToGlf smartCount \ + printIcounts splitgl contamination NGSadmix } diff --git a/sci-biology/angsd/metadata.xml b/sci-biology/angsd/metadata.xml index 1699e58b2..f68a1b6fa 100644 --- a/sci-biology/angsd/metadata.xml +++ b/sci-biology/angsd/metadata.xml @@ -5,7 +5,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> -<maintainer type="project"> + <maintainer type="project"> <email>sci-biology@gentoo.org</email> <name>Gentoo Biology Project</name> </maintainer> |