sci-biology/autoeditor: automatiucally correct basecalling errors using multiple sequence alignments of the Sanger-based reads

(Portage version: 2.1.9.24/git/Linux i686, unsigned Manifest commit)

1 files changed, 22 insertions, 0 deletions

diff --git a/sci-biology/autoeditor/metadata.xml b/sci-biology/autoeditor/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@gentoo.org</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+    <longdescription>AutoEditor is a program that can automatically correct discrepancies in a
+        multiple alignment by reanalyzing the chromatograms of the discrepant bases.
+        The input to AutoEditor is the multiple alignment in contig form, the sequence
+        and quality values in FASTA format, and the base call positions in
+        "SEQNAME basecallpositions\n" format where the basecall positions are written
+        in hex (4 nibbles per basecall position) concatentated together. The path
+        to the chromatograms for the sequences should be specified with the -c option.
+        More help is available with -h.
+
+        The output is to a timestamped autoEditor directory that has the input files
+        edited along with other TIGR specific file formats. Sample input data is
+        provided with the distribution in the sample directory.
+    </longdescription>
+</pkgmetadata>