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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-04-27 12:57:24 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-04-27 12:57:24 +0200 |
| commit | f3ff593d2e85576411873642f086c9e574431083 (patch) | |
| tree | 88807fd07f118c1f39eed5ee760f87c4e95b67ce /sci-biology/barrnap | |
| parent | initial commit (diff) | |
| download | sci-f3ff593d2e85576411873642f086c9e574431083.tar.gz sci-f3ff593d2e85576411873642f086c9e574431083.tar.bz2 sci-f3ff593d2e85576411873642f086c9e574431083.zip | |
sci-biology/barrnap: version bump; adjust the ebuild to new install layout
Package-Manager: portage-2.2.18
Diffstat (limited to 'sci-biology/barrnap')
| -rw-r--r-- | sci-biology/barrnap/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/barrnap/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/barrnap/barrnap-0.3.ebuild | 2 | ||||
| -rw-r--r-- | sci-biology/barrnap/barrnap-0.4.ebuild | 43 |
4 files changed, 51 insertions, 1 deletions
diff --git a/sci-biology/barrnap/ChangeLog b/sci-biology/barrnap/ChangeLog index 50bd6cd18..05d6b32c1 100644 --- a/sci-biology/barrnap/ChangeLog +++ b/sci-biology/barrnap/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*barrnap-0.4 (27 Apr 2015) + + 27 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +barrnap-0.4.ebuild, + barrnap-0.3.ebuild: + sci-biology/barrnap: version bump; adjust the ebuild to new install layout + 07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> barrnap-0.3.ebuild: generalized dependency on perl diff --git a/sci-biology/barrnap/Manifest b/sci-biology/barrnap/Manifest index 25eaaab3d..11284c5d9 100644 --- a/sci-biology/barrnap/Manifest +++ b/sci-biology/barrnap/Manifest @@ -1 +1,2 @@ DIST barrnap-0.3.tar.gz 4102752 SHA256 f99a808a3b304748fff0394e4e048a8efb0a52ee309b6a4f7296e3e2cf05ce69 SHA512 4b67e995b335e9e8397481c60058bf3a21044e1829781f277027ce2b3e4836c17c30dc2453c6d7d3c00ef8c07394fc5cb46719bfd397e66db7d4ba3c5bfdd514 WHIRLPOOL 7c43f9eec8aa644de7b1f53d626b13fb1b838bef81680a7e96063f79e80ce2d23a101d1fef8cd7ad87165e24555f2bd866c02ff36d45bd5068c56f37c7a27542 +DIST barrnap-0.4.tar.gz 8053614 SHA256 9e31936283f1fbb4822afdfb589f82cc736d8a9c3e70bd8c46928b4cc8110f04 SHA512 77490398978df73cd2c5529403674cdb2142fa57506a997a95bd4c90a897756554a2d10598e28bac396b8b611b8c9b1c6eaf3bfb4e0d22724c4175d18c2e16ea WHIRLPOOL e721bc9859c633339ad6012373b116e730c5c3e68a810a75105a70e46cbba1c6609d128289feab5c6b192594c393c02c42a6e4b412cc35ed377beba926fb4bef diff --git a/sci-biology/barrnap/barrnap-0.3.ebuild b/sci-biology/barrnap/barrnap-0.3.ebuild index 43d1a135c..06d01c30f 100644 --- a/sci-biology/barrnap/barrnap-0.3.ebuild +++ b/sci-biology/barrnap/barrnap-0.3.ebuild @@ -12,7 +12,7 @@ SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz" LICENSE="GPL-3" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64" IUSE="" # contains bundled binaries of hmmer-3.1 (dev version) diff --git a/sci-biology/barrnap/barrnap-0.4.ebuild b/sci-biology/barrnap/barrnap-0.4.ebuild new file mode 100644 index 000000000..8855b27cc --- /dev/null +++ b/sci-biology/barrnap/barrnap-0.4.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +DESCRIPTION="Predict Bacterial and Archaeal rRNA genes and output in GFF3 format" +HOMEPAGE="http://www.vicbioinformatics.com/software.barrnap.shtml" +SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +# contains bundled binaries of hmmer-3.1 (dev version) +# needs >=perl-5.6 + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/perl + sci-biology/nesoni" + +src_install(){ + # the below recreates the whole layout + insinto /usr/share/"${PN}"/bin + doins bin/barrnap + chmod a+rx "${D}"/usr/share/"${PN}"/bin/barrnap || die + insinto /usr/share/"${PN}"/binaries/linux + doins binaries/linux/nhmmer + chmod a+rx "${D}"/usr/share/"${PN}"/binaries/linux/nhmmer || die + insinto /usr/share/"${PN}"/db + doins db/* + insinto /usr/share/"${PN}"/examples + doins examples/* + + echo PATH=/usr/share/"${PN}"/bin:$PATH > "${S}"/99barrnap + doenvd "${S}"/99barrnap + + dodoc README.md +} |