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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-07-15 12:08:38 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-07-15 12:08:38 +0200 |
| commit | da6238be4b7a9b14122d501670264c61723f8235 (patch) | |
| tree | 473c6e065652faeae625142813e81a1e3267c8af /sci-biology/biobambam2/metadata.xml | |
| parent | sc-libs/libmaus2: minor polishing (diff) | |
| download | sci-da6238be4b7a9b14122d501670264c61723f8235.tar.gz sci-da6238be4b7a9b14122d501670264c61723f8235.tar.bz2 sci-da6238be4b7a9b14122d501670264c61723f8235.zip | |
sci-biology/biobambam2: an updated package of sci-biology/biobambam, more ebuild tweaks
Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-biology/biobambam2/metadata.xml')
| -rw-r--r-- | sci-biology/biobambam2/metadata.xml | 21 |
1 files changed, 21 insertions, 0 deletions
diff --git a/sci-biology/biobambam2/metadata.xml b/sci-biology/biobambam2/metadata.xml new file mode 100644 index 000000000..a3e55a407 --- /dev/null +++ b/sci-biology/biobambam2/metadata.xml @@ -0,0 +1,21 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription lang="en"> +This package contains some tools for processing BAM files including + +bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name +bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field +bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column +bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. +bamsort: reads BAM and writes BAM resorted by coordinates or query name +bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name +</longdescription> + <upstream> + <remote-id type="github">gt1/biobambam</remote-id> + </upstream> +</pkgmetadata> |