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| author |   Linlin Yan <yanlinlin82@gmail.com> | 2014-12-21 20:02:06 +0800 |
|---|---|---|
| committer | Linlin Yan <yanlinlin82@gmail.com> | 2014-12-21 20:02:06 +0800 |
| commit | e1b72f907d6de13465c6d1f84a6cd588f22dacfc (patch) | |
| tree | d68c35a6daf9016ee7368b7aaaeea320fe35e4cc /sci-biology/bismark | |
| parent | sci-biology/bismark: Add new package. (diff) | |
| download | sci-e1b72f907d6de13465c6d1f84a6cd588f22dacfc.tar.gz sci-e1b72f907d6de13465c6d1f84a6cd588f22dacfc.tar.bz2 sci-e1b72f907d6de13465c6d1f84a6cd588f22dacfc.zip | |
sci-biology/bismark: Remove 'dodir' and break long lines.
Diffstat (limited to 'sci-biology/bismark')
| -rw-r--r-- | sci-biology/bismark/bismark-0.13.0.ebuild | 1 | ||||
| -rw-r--r-- | sci-biology/bismark/metadata.xml | 16 |
2 files changed, 9 insertions, 8 deletions
diff --git a/sci-biology/bismark/bismark-0.13.0.ebuild b/sci-biology/bismark/bismark-0.13.0.ebuild index b62a44aa2..a941da61f 100644 --- a/sci-biology/bismark/bismark-0.13.0.ebuild +++ b/sci-biology/bismark/bismark-0.13.0.ebuild @@ -22,7 +22,6 @@ S="${WORKDIR}/${PN}_v${PV}" src_install() { dobin bismark{,2bedGraph,2report,_genome_preparation,_methylation_extractor} coverage2cytosine deduplicate_bismark - dodir /usr/share/${P} insinto /usr/share/${P} doins bismark_sitrep.tpl dosym /usr/share/${P}/bismark_sitrep.tpl /usr/bin/bismark_sitrep.tpl diff --git a/sci-biology/bismark/metadata.xml b/sci-biology/bismark/metadata.xml index 12d2ae01b..7c23d3ec8 100644 --- a/sci-biology/bismark/metadata.xml +++ b/sci-biology/bismark/metadata.xml @@ -7,12 +7,14 @@ </maintainer> <herd>sci-biology</herd> <longdescription lang="en"> -Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away. It's main features are: - -Bisulfite mapping and methylation calling in one single step -Supports single-end and paired-end read alignments -Supports ungapped and gapped alignments -Alignment seed length, number of mismatches etc. are adjustable -Output discriminates between cytosine methylation in CpG, CHG and CHH context +Bismark is a program to map bisulfite treated sequencing reads to a genome of +interest and perform methylation calls in a single step. The output can be +easily imported into a genome viewer, such as SeqMonk, and enables a researcher +to analyse the methylation levels of their samples straight away. It's main +features are: (1) Bisulfite mapping and methylation calling in one single step; +(2) Supports single-end and paired-end read alignments; (3) Supports ungapped +and gapped alignments; (4) Alignment seed length, number of mismatches etc. are +adjustable; (5) Output discriminates between cytosine methylation in CpG, CHG +and CHH context. </longdescription> </pkgmetadata> |