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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 10:42:33 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 10:42:33 +0100 |
| commit | e45541df91e0f201695648836bd4b480568c9da4 (patch) | |
| tree | 0aad189a125469d98b9e122a11639fa5f7a23fe1 /sci-biology/bismark | |
| parent | sci-biology/bedops: drop old (diff) | |
| download | sci-e45541df91e0f201695648836bd4b480568c9da4.tar.gz sci-e45541df91e0f201695648836bd4b480568c9da4.tar.bz2 sci-e45541df91e0f201695648836bd4b480568c9da4.zip | |
sci-biology/bismark: version bump 0.23.0, EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/bismark')
| -rw-r--r-- | sci-biology/bismark/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/bismark/bismark-0.23.0.ebuild | 27 |
2 files changed, 28 insertions, 0 deletions
diff --git a/sci-biology/bismark/Manifest b/sci-biology/bismark/Manifest index c908dd10e..1ca1c8416 100644 --- a/sci-biology/bismark/Manifest +++ b/sci-biology/bismark/Manifest @@ -1 +1,2 @@ +DIST bismark-0.23.0.tar.gz 8802084 BLAKE2B fdd7cb13ac86ab99040dc6bd9baa5d8ab7f311b918298b9e8df327c54a7339e876e298354bded9a0f2280f9b069f0a64a588a9263a95663fb131e29d51536fd0 SHA512 1d0c9e62583a46e59431adec1acc6a3dfa39d4a306253d61a2d64ae44259650e2a6600bf67d8f6fb85ddb694949b3dccc47b18b3a18d74445ba7ea3ed0a2b3b0 DIST bismark_v0.13.0.tar.gz 1667188 BLAKE2B c72f59d35a91e6511a6f52d93547eaff9eba20688ec86c592019689625ce8f31a3ba802c62850421c185c03b285ed8a53549059c7e99779abc376523aff8b79a SHA512 5915e28a9647189d49c584cc0a90ee64ddd444e4acf9bc6c6ae25e1b01b18ab35ca1c3fa3b59834d641fa6c4a4b465d43f2908d3b23f1d45297d49323d3511c0 diff --git a/sci-biology/bismark/bismark-0.23.0.ebuild b/sci-biology/bismark/bismark-0.23.0.ebuild new file mode 100644 index 000000000..0a59fbb15 --- /dev/null +++ b/sci-biology/bismark/bismark-0.23.0.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="Map bisulfite converted sequence reads and cytosine methylation states" +HOMEPAGE="https://www.bioinformatics.babraham.ac.uk/projects/" +SRC_URI="https://github.com/FelixKrueger/Bismark/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="sci-biology/bowtie" + +S="${WORKDIR}/${P^}" + +src_install() { + dobin \ + bismark{,2bedGraph,2report,_genome_preparation,_methylation_extractor} \ + coverage2cytosine deduplicate_bismark + einstalldocs + dodoc -r Docs +} |