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| author |   cel <cel.gentoo@gmail.com> | 2013-09-26 21:35:23 +0200 |
|---|---|---|
| committer | cel <cel.gentoo@gmail.com> | 2013-09-26 21:35:23 +0200 |
| commit | 9ee84fa74a5bc48850d98dd49edbe223e8085e5a (patch) | |
| tree | f6898364a5ab9709fd49a692f3adee05ee72aaa4 /sci-biology/bowtie | |
| parent | sci-biology/bowtie: Added ebuild for bowtie-2.1.0. (diff) | |
| download | sci-9ee84fa74a5bc48850d98dd49edbe223e8085e5a.tar.gz sci-9ee84fa74a5bc48850d98dd49edbe223e8085e5a.tar.bz2 sci-9ee84fa74a5bc48850d98dd49edbe223e8085e5a.zip | |
sci-biology/bowtie: fixed check for sse2 support.
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-2.1.0.ebuild | 21 |
2 files changed, 9 insertions, 14 deletions
diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index a441c96d8..9321813d2 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,4 +1,4 @@ AUX bowtie-2.1.0-buildsystem.patch 734 SHA256 8cc4d242c2b61a34503bc5f82a8baaa16c50b743751162060cefb9a3a3234587 SHA512 1d1f61e331874acb9503c4002c45b49f58145b3d7fb0e03245029e88f2783eb0ba01a6b47c1238d7c6fb82e9a3d7e103808f957151d79208b889f4a212d424f8 WHIRLPOOL e53d25c40781cb8eaffbd6990e2da6aaf44f56cf96caea7d89db17db55a48546f5308d682593a24b3a421a97d830dd21c047da9eb82138da29e1a7318319f2ab DIST bowtie-2.1.0-source.zip 5697131 SHA256 90a9d3a6bd19ddc3a8f90b935c6a2288478572de2ad4039b29f91016b95ef4b0 SHA512 47535c0539674d81dfac16bf0f0730c766afce93fa91bef7eb4f73df2b73fb7988bc344495a909f81374a60ec79117b141442ff13a61af96fe4043dc0e47cc7c WHIRLPOOL fca873eb10c514c22e2aa46cce685050234c9d2838b7a66c6d5648425b980d93a627c187f26af16e74c6b70e8addb8c267dab5af68023b65591f8ad2616344fa -EBUILD bowtie-2.1.0.ebuild 1213 SHA256 f9755689df887af0c63c3821dbdf22a737f1d3b0519f28700f2643b52b7b7297 SHA512 5f05a0417e9be44afbf7936d60c8312abe9494a55fc7cac82c5a09c8a6cd2de99d2a615db7aac4d4e81c4f4f7180fe34dabd950d623ddbfe4aa107aeecbf48c3 WHIRLPOOL 4377327390df0633335738ad15b643660d4244bbd4638b46f8f90450ae0c59d4f227b60adf44c0c33954752e56cb61763fdce073b726d7b66f80446f9fe1da7f +EBUILD bowtie-2.1.0.ebuild 1133 SHA256 6a54b6e1b2ac2437fc29bc5e7813312601e176d1786ce607e03e906d54d9ffb5 SHA512 e93d3d51fafb4f39e50a8abf883fa0c6c2df9947a41acf19a69d9cf7432bb411da232545f54925781a7457dec5ca4529bc45a441f188799ec02bc04e66a88f56 WHIRLPOOL cd45fe7e3106861db6e7f0afff34392f13d4c88b2ba7a435f4100e0ad46e13f885514d5c4cf94cbd3d94329bfb4a600314d44b1b2c68bf1955b64ba17a3268f4 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3 diff --git a/sci-biology/bowtie/bowtie-2.1.0.ebuild b/sci-biology/bowtie/bowtie-2.1.0.ebuild index c2c502442..26bf770ca 100644 --- a/sci-biology/bowtie/bowtie-2.1.0.ebuild +++ b/sci-biology/bowtie/bowtie-2.1.0.ebuild @@ -4,7 +4,7 @@ EAPI=5 -inherit eutils flag-o-matic toolchain-funcs +inherit eutils toolchain-funcs DESCRIPTION="An ultrafast memory-efficient short read aligner" HOMEPAGE="http://bowtie-bio.sourceforge.net/" @@ -12,23 +12,19 @@ SRC_URI="mirror://sourceforge/bowtie-bio/${P}-source.zip" LICENSE="GPL-3" SLOT="2" -IUSE="sse2 examples" +IUSE="examples" KEYWORDS="~amd64 ~x86" -CDEPEND="dev-lang/perl" -DEPEND="${CDEPEND} \ +RDEPEND="dev-lang/perl" +DEPEND="${RDEPEND} app-arch/unzip" -RDEPEND="${CDEPEND}" S="${WORKDIR}/${PN}2-${PV}" pkg_pretend() { - if ! use sse2 ; then - ebegin - eerror "bowtie2 requires sse2 support. Please make sure your system supports" - eerror "sse2 and enable the sse2 use flag." - eend - die + grep "sse2" /proc/cpuinfo > /dev/null + if [[ $? -ne 0 ]] ; then + ewarn "Your processor does not support sse2. Bowtie will probably not work on this machine." fi } @@ -37,12 +33,11 @@ src_prepare() { } src_compile() { - use sse2 && append-cxxflags -msse2 emake \ CC="$(tc-getCC)" \ CPP="$(tc-getCXX)" \ EXTRA_FLAGS="${LDFLAGS}" \ - RELEASE_FLAGS="${CXXFLAGS}" + RELEASE_FLAGS="${CXXFLAGS} -msse2" } src_install() { |