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| author |   Andrey Kislyuk <kislyuk@devel.(none)> | 2009-02-27 07:33:00 -0500 |
|---|---|---|
| committer | Andrey Kislyuk <kislyuk@devel.(none)> | 2009-02-27 07:33:00 -0500 |
| commit | b00615d22b9a7f812e10a225b64c241d474958f7 (patch) | |
| tree | 1fcdde59c1b18b038d30664cd1e05d991b8030ce /sci-biology/bowtie | |
| parent | sci-libs/bables-db Changelog added (diff) | |
| download | sci-b00615d22b9a7f812e10a225b64c241d474958f7.tar.gz sci-b00615d22b9a7f812e10a225b64c241d474958f7.tar.bz2 sci-b00615d22b9a7f812e10a225b64c241d474958f7.zip | |
New package sci-biology/bowtie
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/bowtie/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.9.9.ebuild | 29 |
3 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog new file mode 100644 index 000000000..c5f7214d2 --- /dev/null +++ b/sci-biology/bowtie/ChangeLog @@ -0,0 +1,7 @@ +# ChangeLog for sci-biology/bowtie +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 27 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package sci-biology/bowtie, ebuild written by me + diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest new file mode 100644 index 000000000..7fc7865dc --- /dev/null +++ b/sci-biology/bowtie/Manifest @@ -0,0 +1,3 @@ +DIST bowtie-0.9.9-src.zip 10359925 RMD160 4d8ac96196706156693173e423a47e202b5462f3 SHA1 a4eaaa5efaa63c536baa8858915b610ad5cdfc3e SHA256 762a7420a0f53e1119875bc632db3409180fefed81a2b15240835dd5aaf1e7a7 +EBUILD bowtie-0.9.9.ebuild 790 RMD160 bd113200e595a48c72f4deadfb9581cce22eb94f SHA1 044e028c7be8bdaac555e8b5679f0f4194e1d2fd SHA256 d44715c9eb51334a5e87cbaba1703b89bf9a3af74a1aa5d8dfe795bba111499f +MISC bowtie-0.9.9.ebuild~ 697 RMD160 e5dc498efb2b0ecc1f40811da42327c3b56c794d SHA1 1de6c878e147e11cbdf9a06647ed14e3acd6a30b SHA256 0352b4b553b3bc1cf6cdceb57d60f1312dee4be3fd325364ecb9a71e61d5014c diff --git a/sci-biology/bowtie/bowtie-0.9.9.ebuild b/sci-biology/bowtie/bowtie-0.9.9.ebuild new file mode 100644 index 000000000..7c4f4ab97 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.9.9.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1.ebuild,v 1.3 2009/02/26 17:36:19 weaver Exp $ + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) +# FIXME: Requires patching for gcc 4.3 + +src_unpack() { + unpack ${A} + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" +} + +src_install() { + dobin bowtie bowtie-* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} |