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| author |   Ted Tanberry <ted.tanberry@gmail.com> | 2015-02-06 09:59:48 +0100 |
|---|---|---|
| committer | Ted Tanberry <ted.tanberry@gmail.com> | 2015-02-06 09:59:48 +0100 |
| commit | 0e022df74f7743c179892b2d68d693ac4031c880 (patch) | |
| tree | 5fef833e14fe3675aba8903dd4ed876ece51a28d /sci-biology/bwa/bwa-0.7.12.ebuild | |
| parent | Updated bwa to 0.7.12 and modernized the build system. Removed hard-coded ar. (diff) | |
| download | sci-0e022df74f7743c179892b2d68d693ac4031c880.tar.gz sci-0e022df74f7743c179892b2d68d693ac4031c880.tar.bz2 sci-0e022df74f7743c179892b2d68d693ac4031c880.zip | |
Amended bwa ebuild to remove base.eclass
Diffstat (limited to 'sci-biology/bwa/bwa-0.7.12.ebuild')
| -rw-r--r-- | sci-biology/bwa/bwa-0.7.12.ebuild | 19 |
1 files changed, 11 insertions, 8 deletions
diff --git a/sci-biology/bwa/bwa-0.7.12.ebuild b/sci-biology/bwa/bwa-0.7.12.ebuild index 353c4bf93..62488f328 100644 --- a/sci-biology/bwa/bwa-0.7.12.ebuild +++ b/sci-biology/bwa/bwa-0.7.12.ebuild @@ -4,7 +4,7 @@ EAPI=5 -inherit base toolchain-funcs +inherit eutils toolchain-funcs DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner" HOMEPAGE="http://bio-bwa.sourceforge.net/" @@ -17,15 +17,18 @@ KEYWORDS="~amd64 ~x86 ~x64-macos" PATCHES=( "${FILESDIR}"/${PN}_Makefile.patch ) -src_compile() { +src_prepare() { + epatch ${PATCHES[@]} tc-export CC AR - default } src_install() { - dobin bwa || die - doman bwa.1 || die - exeinto /usr/share/${PN} - doexe qualfa2fq.pl xa2multi.pl || die - dodoc NEWS.md README-alt.md README.md || die + dobin bwa + + doman bwa.1 + + exeinto /usr/libexec/${PN} + doexe qualfa2fq.pl xa2multi.pl + + dodoc NEWS.md README-alt.md README.md } |