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| author |   Justin Lecher <jlec@gentoo.org> | 2015-03-03 16:16:58 +0100 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2015-03-03 16:16:58 +0100 |
| commit | de8eb4ef90bedc116258edad0d769d7469dbc28c (patch) | |
| tree | df807a7a7caae455a3f5da20580573850d014f2b /sci-biology/bwa/files/bwa_Makefile.patch | |
| parent | app-doc/root-docs: 5.34.26 is now in portage (diff) | |
| download | sci-de8eb4ef90bedc116258edad0d769d7469dbc28c.tar.gz sci-de8eb4ef90bedc116258edad0d769d7469dbc28c.tar.bz2 sci-de8eb4ef90bedc116258edad0d769d7469dbc28c.zip | |
IMport to CVS
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-biology/bwa/files/bwa_Makefile.patch')
| -rw-r--r-- | sci-biology/bwa/files/bwa_Makefile.patch | 27 |
1 files changed, 0 insertions, 27 deletions
diff --git a/sci-biology/bwa/files/bwa_Makefile.patch b/sci-biology/bwa/files/bwa_Makefile.patch deleted file mode 100644 index 406e9b052..000000000 --- a/sci-biology/bwa/files/bwa_Makefile.patch +++ /dev/null @@ -1,27 +0,0 @@ ---- Makefile -+++ Makefile -@@ -1,8 +1,8 @@ --CC= gcc -+CC?= gcc - #CC= clang --analyze --CFLAGS= -g -Wall -Wno-unused-function -O2 -+CFLAGS?= -g -Wall -Wno-unused-function -O2 - WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS --AR= ar -+AR?= ar - DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC) - LOBJS= utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o - AOBJS= QSufSort.o bwt_gen.o bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \ -@@ -26,10 +26,10 @@ - all:$(PROG) - - bwa:libbwa.a $(AOBJS) main.o -- $(CC) $(CFLAGS) $(DFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS) -+ $(CC) $(CFLAGS) $(LDFLAGS) $(DFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS) - - bwamem-lite:libbwa.a example.o -- $(CC) $(CFLAGS) $(DFLAGS) example.o -o $@ -L. -lbwa $(LIBS) -+ $(CC) $(CFLAGS) $(LDFLAGS) $(DFLAGS) example.o -o $@ -L. -lbwa $(LIBS) - - libbwa.a:$(LOBJS) - $(AR) -csru $@ $(LOBJS) |