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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-05 16:53:08 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-05 19:05:31 +0100 |
| commit | 5c00b7d3b2bf6c5febb225a4abf08960ca83f42d (patch) | |
| tree | 2ffcb53f00a0d376068837ea060317712c2bddad /sci-biology/chiron | |
| parent | sci-chemistry/pymol-plugins-psico: bump py targets, add keywords (diff) | |
| download | sci-5c00b7d3b2bf6c5febb225a4abf08960ca83f42d.tar.gz sci-5c00b7d3b2bf6c5febb225a4abf08960ca83f42d.tar.bz2 sci-5c00b7d3b2bf6c5febb225a4abf08960ca83f42d.zip | |
sci-biology/chiron: bump py targets, add keywords
Closes: https://github.com/gentoo/sci/pull/1037
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/chiron')
| -rw-r--r-- | sci-biology/chiron/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/chiron/chiron-0.6.1.1.ebuild | 29 | ||||
| -rw-r--r-- | sci-biology/chiron/chiron-9999.ebuild | 22 |
3 files changed, 30 insertions, 22 deletions
diff --git a/sci-biology/chiron/Manifest b/sci-biology/chiron/Manifest new file mode 100644 index 000000000..2cde5a081 --- /dev/null +++ b/sci-biology/chiron/Manifest @@ -0,0 +1 @@ +DIST chiron-0.6.1.1.tar.gz 53281188 BLAKE2B 56c623ec0d2f8970cd03d892d321362145b44890a0384d5209a2bd8c19b22509ec0557e539f021240a447e836ca6cd3531f3c9ac827b6ece715b086fca73d9f3 SHA512 b74e7f3cea9d206bc0c456189ec643de684a866bdb2dd6fd9d05ac11efd2b980d1aa09f7fc2a2aa3d5df56ca60e7a57c23d63e20df3df10f3ab82c5289d8a52f diff --git a/sci-biology/chiron/chiron-0.6.1.1.ebuild b/sci-biology/chiron/chiron-0.6.1.1.ebuild new file mode 100644 index 000000000..645e4ed30 --- /dev/null +++ b/sci-biology/chiron/chiron-0.6.1.1.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7,8} ) +DISTUTILS_USE_SETUPTOOLS=rdepend + +inherit distutils-r1 + +DESCRIPTION="A deep neural network basecaller for nanopore sequencing" +HOMEPAGE="https://github.com/haotianteng/chiron + https://www.biorxiv.org/content/early/2017/09/12/179531" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="MPL-2.0" +SLOT="0" +KEYWORDS="~amd64" + +RDEPEND=" + dev-python/h5py[${PYTHON_USEDEP}] + sci-biology/mappy[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + dev-python/tqdm[${PYTHON_USEDEP}] + sci-biology/biopython[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + sci-libs/tensorflow[${PYTHON_USEDEP}] +" diff --git a/sci-biology/chiron/chiron-9999.ebuild b/sci-biology/chiron/chiron-9999.ebuild deleted file mode 100644 index 4294326ee..000000000 --- a/sci-biology/chiron/chiron-9999.ebuild +++ /dev/null @@ -1,22 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python2_7 pypy ) - -inherit distutils-r1 eutils git-r3 - -DESCRIPTION="Basecaller for OxfordNanopore data using deep learning" -HOMEPAGE="https://github.com/haotianteng/chiron - https://www.biorxiv.org/content/early/2017/09/12/179531" -EGIT_REPO_URI="https://github.com/haotianteng/chiron" - -LICENSE="MPL-2.0" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="~sci-libs/tensorflow-1.0.1" -RDEPEND="${DEPEND} - dev-python/h5py" |