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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-19 16:19:37 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-19 16:19:37 +0100 |
| commit | 7b22a0bd06cb74e6860711e3ecb74c414a99cf23 (patch) | |
| tree | 210a0dc0340bfe08cb3a2854010ebc65221d8efe /sci-biology/conform-gt | |
| parent | sci-biology/bambino: remove pack, upstream gone (diff) | |
| download | sci-7b22a0bd06cb74e6860711e3ecb74c414a99cf23.tar.gz sci-7b22a0bd06cb74e6860711e3ecb74c414a99cf23.tar.bz2 sci-7b22a0bd06cb74e6860711e3ecb74c414a99cf23.zip | |
sci-biology/conform-gt: fix fetch, add keywords
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/conform-gt')
| -rw-r--r-- | sci-biology/conform-gt/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/conform-gt/conform-gt-1174.ebuild | 24 |
2 files changed, 14 insertions, 12 deletions
diff --git a/sci-biology/conform-gt/Manifest b/sci-biology/conform-gt/Manifest index 11bb1ffa0..efb9b49e9 100644 --- a/sci-biology/conform-gt/Manifest +++ b/sci-biology/conform-gt/Manifest @@ -1 +1 @@ -DIST conform-gt.r1174.zip 128608 BLAKE2B 54af005bdb32f76d6d255965bfda186c0b1fca9907d55a54d280eeaf7a26988efa7d7877400d62bb42f91dd73bea3f3ec913e29f7e2fcbaf877cff6eaf82241b SHA512 8547f122c4298e19d5284969ca7410d7a1581028e8155b554acedff16fed5d07ddb4f6f8e986279b8fec5012d7d95d278abd9af4049fa9d0ea08e5dfc775fffc +DIST conform-gt.24May16.cee.jar 118655 BLAKE2B 9349ae8084724be365eba0dc248ff878436ef27d0d221f9a8df462ce42916417f29f3127b63aa380053039d96452792a82ac55928a36997362e51013fdf66e2a SHA512 c2588099190a15979d409bb6614aab9ccdd72f70fdd6faa9346cb288a0a1e9a34941925a4d1460b713d34baaf5fd484388e74c46f44b5befc2358eec42e361fa diff --git a/sci-biology/conform-gt/conform-gt-1174.ebuild b/sci-biology/conform-gt/conform-gt-1174.ebuild index 507c94c37..edd699ae1 100644 --- a/sci-biology/conform-gt/conform-gt-1174.ebuild +++ b/sci-biology/conform-gt/conform-gt-1174.ebuild @@ -1,21 +1,23 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 + +inherit java-pkg-2 DESCRIPTION="Modify your Variant Call Format file to be consistent with reference VCF" -HOMEPAGE="http://faculty.washington.edu/browning/conform-gt.html" -SRC_URI="http://faculty.washington.edu/browning/conform-gt/conform-gt.r1174.zip" +HOMEPAGE="https://faculty.washington.edu/browning/conform-gt.html" +SRC_URI="https://faculty.washington.edu/browning/conform-gt/conform-gt.24May16.cee.jar" -LICENSE="Apache-2.0" +LICENSE="Apache-2.0 MIT" SLOT="0" -KEYWORDS="" -IUSE="" +KEYWORDS="~amd64 ~x86" -DEPEND="" +DEPEND=">=virtual/jre-1.7:*" RDEPEND="${DEPEND}" -# Some source files in the net.sf.samtools package are licensed under the MIT License. -# http://bochet.gcc.biostat.washington.edu/beagle/1000_Genomes_phase1_vcf/ +S="${WORKDIR}" -S="${WORKDIR}"/src +src_install() { + java-pkg_newjar "${DISTDIR}/conform-gt.24May16.cee.jar" "${PN}.jar" +} |