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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-24 15:29:33 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-24 15:29:33 +0100 |
| commit | e4d160b889b5217e7eff07576ce4df910ff2200a (patch) | |
| tree | 619be9897eaceee0c2241f882703a00d107a5eec /sci-biology/flexbar | |
| parent | sci-biology/exonerate-gff3: remove keyword from live ebuild (diff) | |
| download | sci-e4d160b889b5217e7eff07576ce4df910ff2200a.tar.gz sci-e4d160b889b5217e7eff07576ce4df910ff2200a.tar.bz2 sci-e4d160b889b5217e7eff07576ce4df910ff2200a.zip | |
sci-biology/flexbar: version bump, cmake-utils --> cmake
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/flexbar')
| -rw-r--r-- | sci-biology/flexbar/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/flexbar/flexbar-2.7.0.ebuild | 33 | ||||
| -rw-r--r-- | sci-biology/flexbar/flexbar-3.5.0.ebuild (renamed from sci-biology/flexbar/flexbar-3.0.0.ebuild) | 10 |
3 files changed, 5 insertions, 41 deletions
diff --git a/sci-biology/flexbar/Manifest b/sci-biology/flexbar/Manifest index 92c682f14..a5f19fa17 100644 --- a/sci-biology/flexbar/Manifest +++ b/sci-biology/flexbar/Manifest @@ -1,2 +1 @@ -DIST flexbar-2.7.0.tar.gz 30033 BLAKE2B e8c8f8e9f2e44870c844b59d40cd7c6d4da599e1d59d5b5201e3b6e3dbc2d088680253e43c5c72b57a7a33401b0a2b4770c34700e415af6be4b250c6dda0806f SHA512 38dc40476dadd769977dd2428941928e839e107e719e9b595c2ba57e1d8764fb394c5960b809da99dc939a66cae9350ea607e393b9467e98d464d0e49bcdac47 -DIST flexbar-3.0.0.tar.gz 31292 BLAKE2B 43abf3cc9d58423f1a26d52d673fd08450b149de85af49aa35036abd2906e2648d844a83b5578be57a83b5636ae70d934c48891d64596260828ea638338e8bc0 SHA512 ccefb4d1342ce5353a64510f79f8b15c409eb68853eb98ed7c9b23cb53d926e5b6965b1a9d3d8a5b3699da2f18cf8a627d5ca3ed172e25693a80d878547d6d38 +DIST flexbar-3.5.0.tar.gz 44021 BLAKE2B 2d21b366f3da5ad5a4b3c73530af11c49a131453dc1588e7836fd2060f2a1aa5c21f109bfcdc362dab6d7aeecb0bed683e58b9d50e9ba808c98bef45b2510c57 SHA512 5df1e8cb2c713256945f9fe3ed5d5faca0f3776f5be24e01ba659973e373c45b87141331fd37ceb8f38483e1ee41762671157c55798da133cbca68608e25f409 diff --git a/sci-biology/flexbar/flexbar-2.7.0.ebuild b/sci-biology/flexbar/flexbar-2.7.0.ebuild deleted file mode 100644 index 9fc465c10..000000000 --- a/sci-biology/flexbar/flexbar-2.7.0.ebuild +++ /dev/null @@ -1,33 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils - -DESCRIPTION="Barcode, MID tag and adapter sequence removal" -HOMEPAGE="https://github.com/seqan/flexbar" -SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -CDEPEND=" - dev-cpp/tbb - >=sci-biology/seqan-2.1.1:0" -DEPEND="${CDEPEND}" -RDEPEND="${CDEPEND}" - -# TODO: need to call 'pkg-config --cflags seqan-2.2' and pass it down -src_configure() { - local CPPFLAGS=${CPPFLAGS} - append-cppflags `pkg-config --cflags seqan-2.2` - local CXXFLAGS="${CXXFLAGS}" - append-cxxflags "-std=c++14" - cmake-utils_src_configure -} - -# SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y -# https://github.com/seqan/flexbar/issues/8 diff --git a/sci-biology/flexbar/flexbar-3.0.0.ebuild b/sci-biology/flexbar/flexbar-3.5.0.ebuild index 65f5dd077..b390f5056 100644 --- a/sci-biology/flexbar/flexbar-3.0.0.ebuild +++ b/sci-biology/flexbar/flexbar-3.5.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -inherit cmake-utils +inherit cmake DESCRIPTION="Barcode, MID tag and adapter sequence removal" HOMEPAGE="https://github.com/seqan/flexbar" @@ -12,7 +12,6 @@ SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="GPL-3" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" CDEPEND=" dev-cpp/tbb @@ -28,14 +27,13 @@ src_configure() { append-cppflags `pkg-config --cflags seqan-2.2` local CXXFLAGS="${CXXFLAGS}" append-cxxflags "-std=c++14" - cmake-utils_src_configure + cmake_src_configure } # SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y # https://github.com/seqan/flexbar/issues/8 src_install(){ - elog `pwd` dobin ../"${P}"_build/flexbar dodoc ../"${P}"/README.md } |