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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2011-07-30 21:22:30 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2011-07-30 21:22:30 +0200 |
| commit | 85b7bd86f5737125ae7d6eeee78080bd8169dc0c (patch) | |
| tree | bdce85bb9248c6039ce00061439bea5049708a41 /sci-biology/gbrowse/Manifest | |
| parent | sci-biology/gbrowse: add missing brackets cause a perl error while exporting ... (diff) | |
| download | sci-85b7bd86f5737125ae7d6eeee78080bd8169dc0c.tar.gz sci-85b7bd86f5737125ae7d6eeee78080bd8169dc0c.tar.bz2 sci-85b7bd86f5737125ae7d6eeee78080bd8169dc0c.zip | |
Make sure portage does not run gbrowse_metadb_config.pl otherwise sandbox violation occurs when modifying /var/www/gbrowse2/databases/users.sqlite* file, maybe we could copy these during src_install to the {}, fix there and copy back to live filesystem? Improve error handling in gbrowse_metadb_config.pl. Fix symlink creation during install procedure.
(Portage version: 2.1.10.7/git/Linux i686, unsigned Manifest commit)
Diffstat (limited to 'sci-biology/gbrowse/Manifest')
| -rw-r--r-- | sci-biology/gbrowse/Manifest | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/sci-biology/gbrowse/Manifest b/sci-biology/gbrowse/Manifest index 4ae1a0d01..0946c2e34 100644 --- a/sci-biology/gbrowse/Manifest +++ b/sci-biology/gbrowse/Manifest @@ -1,9 +1,12 @@ AUX GBrowseInstall.pm-2.39.patch 1278 RMD160 96c7f2c66537c6e01cf2619018f608607c0927dc SHA1 a3cb874018d2c7a5acf34381971cc09d83a13f73 SHA256 5a1018f582c2e0ffca034d04ce73f678dd879d90932e4e89ea664c7c113f4b7c AUX destdir.patch 3481 RMD160 adc51869aac4802c968119702ca124b8a9a0d867 SHA1 769442ac0986a4a2ccb1327fca9fdd6984494234 SHA256 63665f69f5dd20bf13d0055faa41331d82baf8984197246988046e893d45bf90 +AUX disable-gbrowse_metadb_config.pl.patch 956 RMD160 a1c1d77eee0b63e19522071f92028ece79b51ade SHA1 8cf0c3dd22bb41b03dbaa91d025c6c312d88055f SHA256 ab637098935cd9ec81243a69236cee08ee43476dcbb9a4d22144a2e56a7d70db AUX fix-PNG-export.patch 480 RMD160 4ef82dd9bfaa23a7d42aec1e2d2c7ed69b9b2fb2 SHA1 0fc39c21fd84d059110d9fc502b2486e9125262a SHA256 ac222c71d29843439c7aab6ffb7ce0c7a741eff68715e5bebdc3a19dd933f444 AUX gbrowse-slave.default 210 RMD160 77245190ab0d3a543f3103bb6f21864f73ea1cde SHA1 a19d60edd3fdc1f059ed8fa58f7e91fc47ec92dc SHA256 e4e6d68ade29681f442b2e1c7f8abbc7ff3255b3b8db3c59ed6368ba561d7d66 AUX gbrowse-slave.init.d 2196 RMD160 8b565d1be23c89cbae0f9fd5cd2201f47a564b94 SHA1 738bc8f06486a0e6caa72642f79f9b7dbb356524 SHA256 de511a92757153ee648eb6cd39e3c69c1e30fa2c2ed406f24c08571c72609219 AUX gbrowse.conf.vhosts.d 740 RMD160 e24f5132e37a84dd0bb9a39e2de99cd11d260844 SHA1 2c44fdcf04bef92eb6210d4e6667b994e5643a13 SHA256 8acd5a067ab3dd42cff0ab7cb0d783b2409ccb872590eba32ea55d4929f65f21 +AUX gbrowse_metadb_config.pl.patch 2305 RMD160 d567aa4402db58bf5c1ae3a84ea221feb24613db SHA1 9c6922dc8872bafd75f75bc51cd0022a1bcf1c9a SHA256 2e06c1fe2d02b03bcd36181c4c3a61a790d489841450341c50fd274575527971 +AUX symlink.patch 498 RMD160 ee64ebf5f3e63d77cb77d3e169f7e096e94fec79 SHA1 aabbe26f4eb36b58537ccf2e7582fbc0f57c9fa4 SHA256 7b33d386901c856b488d32a10264452c0a10e8476d059e9a7bd0b084ad92dd41 DIST GBrowse-2.39.tar.gz 11969088 RMD160 47dd338a0b99632e77a532a3c27d0b9d9d514dca SHA1 2cc48cc1603aa3ae487c47259f9a896bec4eff8e SHA256 b4e76acfa1d8f64d5f227c3ba0258666928b4f357428549be85f05c944337d44 DIST README-gff-files 5309 RMD160 8ba184fa8a6b921f925143cf53de06e3da353023 SHA1 ad2d2b3133c73a05ace4a0107ff1a3a4221bc8f8 SHA256 21f4f026b212698c5aac0e82045670f8397ab50fdfe74b938fcbc71a1d36c82a DIST Refseq_Genome_TBLASTX.tar.gz 56482234 RMD160 e188d9dfe12bed3fd299be4625f7e658f54bb8c4 SHA1 72ec3de9b9ca0e10c2dd8dcda24f9be74f98cf09 SHA256 7036bdd9aefbf44e384df83f4c1e973c1ab3eac8fe74b37499c4a3f1c55a18af @@ -15,6 +18,6 @@ DIST worm.fasta.gz 30593662 RMD160 674ef3d09cdfaa5d748f18c0e769f0a5ca3d48cf SHA1 DIST worm.gff.gz 65789458 RMD160 ddced7c965963ce41a10bdecae949731ed305121 SHA1 ccfb0f287e27ff7849b099c81d811f468a7e617c SHA256 afd63c65c3fdb0ba8a1cf455bd4477a2d5d27d5b0e88c6a5a10d156d0567374f DIST yeast.fasta.gz 3801757 RMD160 5545054cf6ffa5381c7992141144107076fdf62e SHA1 c36fddc5fd2c79e01292f66644088654304bc438 SHA256 bf51cbced31aa6a30bca43cc72fdb53194fbb403407e2ebb9d70c901ab072e6d DIST yeast.gff.gz 249814 RMD160 64538d18de23d930915938bd00ae4a94a52f3960 SHA1 ec753b1ae409e1377f568531a53be8985a7bfa2e SHA256 20c93e6ba9457896a693d13e8fd8fa00d77acbb55aee9b19a31c2b29c4b7e9b1 -EBUILD gbrowse-2.39.ebuild 6550 RMD160 5a67373c84289a9b91957b38ab9500bf123b98ff SHA1 b433e33966903621d4f2d3ec368d1cb40227fa6b SHA256 815ce9a46a03ca29320eed19b197d5bb947937a5674a7fcffeb303cdc8791eb9 -MISC ChangeLog 3965 RMD160 ca69c1d96851aaac18246a39db156d916df66ff2 SHA1 baccfcb148ca894fc5dc9b2939f01961359358ab SHA256 4a1a0b62faeae379624fd164c8c084c451a0f8df38c41c2ff3e4287177ad8866 +EBUILD gbrowse-2.39.ebuild 6789 RMD160 3ca4e5e6ede46a782366522a24682bb15236d99c SHA1 5ced83e7d9279ca76e1532d8bdc5fe4b2477f037 SHA256 a0edd5b51f24041f3c00f7ee324e8636a770c7422e1ecdd89a58d6442887de1a +MISC ChangeLog 4819 RMD160 d4f0b30e70617731d8b241f9c811d080c2dc4f8a SHA1 9496a9fd42fd5ccc1d9571f7d4af0a796c8b1f4c SHA256 a32da925e0544508a2f19dada64de6bbf57c12b4a268bc99497dc6da811ca53d MISC metadata.xml 572 RMD160 bc941571413238acb3d77e61d49b959737ed4f5a SHA1 0c05303509c0e2dd21b37fc93c936809db49e530 SHA256 89b9964a9404a95dbb622a91735348da8e66d34d7dd7e7f144ed8c0159c43e31 |