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author | Martin Mokrejs <mmokrejs@gentoo.org> | 2010-11-27 13:49:01 +0100 |
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committer | Martin Mokrejs <mmokrejs@gentoo.org> | 2010-11-27 13:49:01 +0100 |
commit | da6f848c97a17ad67a317dfd88ad0687d1f92a08 (patch) | |
tree | e862eb2d99310b3de17a7c1bc4084c4d0f1d6636 /sci-biology/gbrowse/files | |
parent | Version bump per bug #311857, added description and longdescription to metadata (diff) | |
download | sci-da6f848c97a17ad67a317dfd88ad0687d1f92a08.tar.gz sci-da6f848c97a17ad67a317dfd88ad0687d1f92a08.tar.bz2 sci-da6f848c97a17ad67a317dfd88ad0687d1f92a08.zip |
Version bump and lots of ebuild improvements, it works for me now
Diffstat (limited to 'sci-biology/gbrowse/files')
-rw-r--r-- | sci-biology/gbrowse/files/GBrowseInstall.pm.patch | 13 | ||||
-rwxr-xr-x | sci-biology/gbrowse/files/gbrowse-slave.default | 12 | ||||
-rwxr-xr-x | sci-biology/gbrowse/files/gbrowse-slave.init.d | 94 | ||||
-rw-r--r-- | sci-biology/gbrowse/files/gbrowse.conf.vhosts.d | 26 |
4 files changed, 145 insertions, 0 deletions
diff --git a/sci-biology/gbrowse/files/GBrowseInstall.pm.patch b/sci-biology/gbrowse/files/GBrowseInstall.pm.patch new file mode 100644 index 000000000..e6163a732 --- /dev/null +++ b/sci-biology/gbrowse/files/GBrowseInstall.pm.patch @@ -0,0 +1,13 @@ +--- GBrowse-2.03/install_util/GBrowseInstall.pm.ori 2010-11-27 12:01:58.000000000 +0100 ++++ GBrowse-2.03/install_util/GBrowseInstall.pm 2010-11-27 12:02:15.000000000 +0100 +@@ -436,8 +436,8 @@ + $self->ownership_warning($databases,$user); + } + +- chmod 0755,File::Spec->catfile($self->install_path->{'etc'},'init.d','gbrowse-slave'); +- $self->fix_selinux; ++ # chmod 0755,File::Spec->catfile($self->install_path->{'etc'},'init.d','gbrowse-slave'); ++ # $self->fix_selinux; + + my $base = basename($self->install_path->{htdocs}); + diff --git a/sci-biology/gbrowse/files/gbrowse-slave.default b/sci-biology/gbrowse/files/gbrowse-slave.default new file mode 100755 index 000000000..46457c2dc --- /dev/null +++ b/sci-biology/gbrowse/files/gbrowse-slave.default @@ -0,0 +1,12 @@ +#!/bin/sh + +export PERL5LIB=$PERL5LIB + +DAEMON=$INSTALLSCRIPT/gbrowse_slave +USER=$WWWUSER +PRELOAD=$CONF/slave_preload.conf +RUNDIR=/var/run/gbrowse +LOGDIR=/var/log/gbrowse +PORT="8101 8102 8103" +VERBOSITY=3 +NICE=0 diff --git a/sci-biology/gbrowse/files/gbrowse-slave.init.d b/sci-biology/gbrowse/files/gbrowse-slave.init.d new file mode 100755 index 000000000..c298faf3c --- /dev/null +++ b/sci-biology/gbrowse/files/gbrowse-slave.init.d @@ -0,0 +1,94 @@ +#!/bin/sh +### BEGIN INIT INFO +# Provides: gbrowse_slave +# Required-Start: $local_fs +# Required-Stop: $local_fs +# Default-Start: 28 +# Default-Stop: S +# Short-Description: Start/Stop the gbrowse_slave rendering server. +### END INIT INFO + +PATH=/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin +DAEMON=$INSTALLSCRIPT/gbrowse_slave +NAME="gbrowse-slave" +DESC="GBrowse slave track rendering server" + +test -x $DAEMON || exit 0 +set -e + +USER=$WWWUSER +PRELOAD="" +RUNDIR=/var/run/gbrowse +LOGDIR=/var/log/gbrowse +PORT='8101' +VERBOSITY=1 +NICE=0 + +if [ -f /etc/default/gbrowse-slave ]; then + . /etc/default/gbrowse-slave +fi + +mkdir -p $RUNDIR +chown -R $USER $RUNDIR +mkdir -p $LOGDIR +chown -R $USER $LOGDIR + +case "$1" in + start) + echo -n "Starting $DESC: $NAME " + for port in $PORT; do + if test -e $RUNDIR/$NAME.$port.pid ; then + echo "$NAME already running, use restart instead." + else + PRELOAD_DB="" + if [ "$PRELOAD" != "" ]; then + PRELOAD_DB="--preload $PRELOAD" + fi + ARGS="--port $port --verbose $VERBOSITY --log $LOGDIR/gbrowse_slave --pid $RUNDIR/$NAME.$port.pid $PRELOAD_DB" + su $USER -s /bin/sh -c "nice -n $NICE $DAEMON $ARGS" + echo -n "$port " + fi + done + echo "." + ;; + stop) + echo -n "Stopping $DESC: $NAME " + killed=0 + for port in $PORT; do + if test -e $RUNDIR/$NAME.$port.pid ; then + kill -TERM `cat $RUNDIR/$NAME.$port.pid` + killed=1 + fi + echo -n "$port " + done + if [ "$killed" -ne 1 ]; then + base=`basename $DAEMON` + killall -q -r $base || true + fi + echo "." + ;; + status) + for port in $PORT; do + if test -e $RUNDIR/$NAME.$port.pid ; then + kill -0 `cat $RUNDIR/$NAME.$port.pid` + if [ "$?" -eq 0 ]; then + echo "$NAME is running on port $port." + fi + else + echo "$NAME is not running on port $port." + fi + done + ;; + restart|force-reload) + $0 stop + sleep 3 + $0 start + ;; + *) + N=/etc/init.d/$NAME + echo "Usage: $N {start|stop|restart|force-reload|status}" >&2 + exit 1 + ;; +esac + +exit 0 diff --git a/sci-biology/gbrowse/files/gbrowse.conf.vhosts.d b/sci-biology/gbrowse/files/gbrowse.conf.vhosts.d new file mode 100644 index 000000000..a3966ea19 --- /dev/null +++ b/sci-biology/gbrowse/files/gbrowse.conf.vhosts.d @@ -0,0 +1,26 @@ +ScriptAlias /gbrowse/cgi-bin/gbrowse "/var/www/localhost/htdocs/gbrowse/cgi-bin/gbrowse" +ScriptAlias /gbrowse/cgi-bin/ "/var/www/localhost/htdocs/gbrowse/cgi-bin/" + +<Directory "/var/www/localhost/htdocs/gbrowse/cgi-bin/"> + Options ExecCGI + AllowOverride None + <IfModule mod_access.c> + Order allow,deny + Allow from all + </IfModule> +</Directory> + +Alias /gbrowse/i "/var/www/localhost/htdocs/gbrowse/images" +Alias /gbrowse "/var/www/localhost/htdocs/gbrowse" +Alias /gbrowse2 "/var/www/localhost/htdocs/gbrowse" + +<Directory "/var/www/localhost/htdocs/gbrowse"> + Options FollowSymlinks + AllowOverride None + <IfModule mod_access.c> + Order allow,deny + Allow from all + </IfModule> +</Directory> + + |