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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-09-23 19:35:42 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-09-23 19:35:42 +0200 |
| commit | ff1f85519180af8eef93cd641ff1fd06fbf7909a (patch) | |
| tree | fc761c77e875e893cd785d6a2f02f6d88381bfb2 /sci-biology/germline | |
| parent | sci-biology/gbench: add more USE flags (diff) | |
| download | sci-ff1f85519180af8eef93cd641ff1fd06fbf7909a.tar.gz sci-ff1f85519180af8eef93cd641ff1fd06fbf7909a.tar.bz2 sci-ff1f85519180af8eef93cd641ff1fd06fbf7909a.zip | |
sci-biology/germline: version bump
Package-Manager: portage-2.3.0
Diffstat (limited to 'sci-biology/germline')
| -rw-r--r-- | sci-biology/germline/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/germline/germline-1.5.2.ebuild | 36 |
2 files changed, 37 insertions, 0 deletions
diff --git a/sci-biology/germline/Manifest b/sci-biology/germline/Manifest index 3e5e3171f..b5ca88189 100644 --- a/sci-biology/germline/Manifest +++ b/sci-biology/germline/Manifest @@ -1 +1,2 @@ DIST germline-1-5-1.tar.gz 853549 SHA256 a30b64686a5b3300a7334c98fc09508fd5987c76ab91e149f7c4907d138a7a08 SHA512 d274106a332016f11abaa6aaedf5ca46743647b9074a55e593a3779b965a9cce0607edb06f79e0b380ea81fb0a7112b3fe7518a45c96586dbf4172ed8e820f3e WHIRLPOOL 282352653418eca3f477e629a7eb096d05154ee2b37a642f3ff4858881ff31ffaad82ba77fb14b575774419846863d8fe6e1350d398c70601d6745be534bf552 +DIST germline-1-5-2.tar.gz 854243 SHA256 24cd5dca659639d7a64feb2f1d96f38ba261c703f3a711d9154f5ad554d81821 SHA512 a30fd07beda057288a0651f764a92971b8cbf2d802aba7b8216ad3931a9330631e8007dcb74b4be1ac21b3460ba4e67cf08afe7a6689f3fe90f57577c7bf8c0e WHIRLPOOL 051547329162922831ba562a8e0ce443e389346cab604ae3199be57ab0107d0b6db27f3aa1e01a8593625bb39c5411dbc2260f82daf72b94f196f4c65acb2e0f diff --git a/sci-biology/germline/germline-1.5.2.ebuild b/sci-biology/germline/germline-1.5.2.ebuild new file mode 100644 index 000000000..b3b681b16 --- /dev/null +++ b/sci-biology/germline/germline-1.5.2.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit versionator toolchain-funcs + +MY_PV=$(replace_all_version_separators '-') + +DESCRIPTION="Find shared segments of Identity by Descent (IBD) between pairs of individuals" +HOMEPAGE="http://www.cs.columbia.edu/~gusev/germline + http://genome.cshlp.org/content/19/2/318.full" +SRC_URI="http://www.cs.columbia.edu/~gusev/${PN}/${PN}-${MY_PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-libs/boost" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/${PN}-${MY_PV} + +src_prepare(){ + sed -e "s/-O3 /${CXXFLAGS} /;s/g++/$(tc-getCXX)/" -i Makefile || die + sed -e "s#diff -q -s test/expected.match test/generated.match#diff -q -s test/expected.match test/generated.match || cat test/generated.err#" -i Makefile || die + sed -e "s/^all: clean germline bmatch test/all: clean germline bmatch/" -i Makefile || die + default +} + +src_install(){ + dobin germline parse_bmatch + dodoc README +} |