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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-06-26 09:41:48 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-06-26 09:41:48 +0200 |
| commit | b71c9dc45d0a26f46930158e146103fd8287260c (patch) | |
| tree | 7ec939d6fcca732ceb0527970752f8ae743a09aa /sci-biology/gffcompare/files | |
| parent | sci-biology/afni: Added unstable x86 keyword (diff) | |
| download | sci-b71c9dc45d0a26f46930158e146103fd8287260c.tar.gz sci-b71c9dc45d0a26f46930158e146103fd8287260c.tar.bz2 sci-b71c9dc45d0a26f46930158e146103fd8287260c.zip | |
sci-biology/gffcompare: new package
Is a mixture of gclib object and gffcompare objects, hence
the download of two tar.gz files.
Package-Manager: Portage-2.3.40, Repoman-2.3.9
Diffstat (limited to 'sci-biology/gffcompare/files')
| -rw-r--r-- | sci-biology/gffcompare/files/Makefile.patch | 79 |
1 files changed, 79 insertions, 0 deletions
diff --git a/sci-biology/gffcompare/files/Makefile.patch b/sci-biology/gffcompare/files/Makefile.patch new file mode 100644 index 000000000..afb52b2e1 --- /dev/null +++ b/sci-biology/gffcompare/files/Makefile.patch @@ -0,0 +1,79 @@ +--- gffcompare-0.10.5/Makefile 2018-06-26 09:24:06.058542487 +0200 ++++ gffcompare-0.10.5/Makefile 2018-06-26 09:28:08.045119603 +0200 +@@ -16,7 +16,7 @@ + endif + + # CVS checked in +-CC := g++ ++CXX ?= g++ + BASEFLAGS = -Wall -Wextra ${INCDIRS} $(MARCH) \ + -fno-exceptions -fno-rtti -D_REENTRANT + +@@ -24,7 +24,8 @@ + + ifneq (,$(filter %release %static, $(MAKECMDGOALS))) + # -- release build +- CFLAGS = -O3 -DNDEBUG $(BASEFLAGS) ++ CXXFLAGS ?= -O3 -g ++ CXXFLAGS += -DNDEBUG $(BASEFLAGS) + LDFLAGS = + LIBS = + ifneq (,$(findstring static,$(MAKECMDGOALS))) +@@ -37,16 +38,16 @@ + ifeq "$(GCCVER49)" "0" + $(error gcc version 4.9 or greater is required for this build target) + endif +- CFLAGS := -fno-omit-frame-pointer -fsanitize=undefined -fsanitize=address ++ CXXFLAGS += -fno-omit-frame-pointer -fsanitize=undefined -fsanitize=address + GCCVER5 := $(shell expr `g++ -dumpversion | cut -f1 -d.` \>= 5) + ifeq "$(GCCVER5)" "1" +- CFLAGS += -fsanitize=bounds -fsanitize=float-divide-by-zero -fsanitize=vptr +- CFLAGS += -fsanitize=float-cast-overflow -fsanitize=object-size +- #CFLAGS += -fcheck-pointer-bounds -mmpx ++ CXXFLAGS += -fsanitize=bounds -fsanitize=float-divide-by-zero -fsanitize=vptr ++ CXXFLAGS += -fsanitize=float-cast-overflow -fsanitize=object-size ++ #CXXFLAGS += -fcheck-pointer-bounds -mmpx + endif +- CFLAGS += $(BASEFLAGS) +- CFLAGS := -g -DDEBUG -D_DEBUG -DGDEBUG -fno-common -fstack-protector $(CFLAGS) +- LDFLAGS := -g ++ CXXFLAGS += $(BASEFLAGS) ++ CXXFLAGS += -DDEBUG -D_DEBUG -DGDEBUG -fno-common -fstack-protector ++ LDFLAGS ?= -g + #LIBS := -Wl,-Bstatic -lasan -lubsan -Wl,-Bdynamic -ldl $(LIBS) + LIBS := -lasan -lubsan -ldl $(LIBS) + else +@@ -55,26 +56,26 @@ + # GMEMTRACE=1 + #endif + #--- just plain debug build --- +- CFLAGS = -g -DDEBUG -D_DEBUG -DGDEBUG $(BASEFLAGS) +- LDFLAGS = -g ++ CXXFLAGS += -DDEBUG -D_DEBUG -DGDEBUG $(BASEFLAGS) ++ LDFLAGS += -g + LIBS = + endif + endif + + %.o : %.c +- ${CC} ${CFLAGS} -c $< -o $@ ++ ${CXX} ${CXXFLAGS} -c $< -o $@ + + %.o : %.cc +- ${CC} ${CFLAGS} -c $< -o $@ ++ ${CXX} ${CXXFLAGS} -c $< -o $@ + + %.o : %.C +- ${CC} ${CFLAGS} -c $< -o $@ ++ ${CXX} ${CXXFLAGS} -c $< -o $@ + + %.o : %.cpp +- ${CC} ${CFLAGS} -c $< -o $@ ++ ${CXX} ${CXXFLAGS} -c $< -o $@ + + %.o : %.cxx +- ${CC} ${CFLAGS} -c $< -o $@ ++ ${CXX} ${CXXFLAGS} -c $< -o $@ + + # C/C++ linker + |