drop sci-biology/jalview as dep <sci-chemistry/jmol-11.1 in missing

4 files changed, 0 insertions, 87 deletions

diff --git a/sci-biology/jalview/ChangeLog b/sci-biology/jalview/ChangeLog
deleted file mode 100644
index 81505752d..000000000
--- a/sci-biology/jalview/ChangeLog
+++ /dev/null
@@ -1,15 +0,0 @@
-# ChangeLog for sci-biology/jalview
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  13 Jul 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
-  jalview-2.4.ebuild:
-  Added comment about dependency: dev-java/vecmath is only in the java
-  overlay. Removed pmask for now.
-
-  10 Jul 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de> ChangeLog:
-  mask for removal since dependencies cannot be fulfilled (dev-java/vecmath)
-
-  10 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
-  New package, ebuild written by me
-
diff --git a/sci-biology/jalview/Manifest b/sci-biology/jalview/Manifest
deleted file mode 100644
index 3726e0d9d..000000000
--- a/sci-biology/jalview/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST jalview_2_6_1.tar.gz 16315652 SHA256 65f211e5aff682b8bc3f36c0b24051c38fd1f66fe4e45bb94d20ee84320c8250
diff --git a/sci-biology/jalview/jalview-2.6.1.ebuild b/sci-biology/jalview/jalview-2.6.1.ebuild
deleted file mode 100644
index 5f9ca5c87..000000000
--- a/sci-biology/jalview/jalview-2.6.1.ebuild
+++ /dev/null
@@ -1,62 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="2"
-
-EANT_GENTOO_CLASSPATH="jmol,castor-1.0,log4j,commons-logging,commons-discovery,wsdl4j,xerces-2,saaj,vecmath,javahelp,sun-jaf"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_BUILD_TARGET="distclean makedist"
-JAVA_PKG_IUSE="source doc"
-
-inherit java-pkg-2 java-ant-2 eutils
-
-DESCRIPTION="A multiple DNA sequence alignment editor"
-HOMEPAGE="http://www.jalview.org/"
-SRC_URI="http://www.jalview.org/source/jalview_2_6_1.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-COMMON_DEPS=">=sci-chemistry/jmol-11.0.2 <sci-chemistry/jmol-11.1
-	dev-java/castor:1.0
-	dev-java/log4j"
-DEPEND=">=virtual/jdk-1.5
-	${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.5
-	dev-java/commons-discovery
-	dev-java/commons-logging
-	dev-java/saaj
-	dev-java/xerces
-	dev-java/wsdl4j
-	dev-java/vecmath
-	dev-java/javahelp
-	dev-java/sun-jaf
-	dev-java/sun-javamail
-	${COMMON_DEPS}"
-
-# Note: dev-java/vecmath is in the java overlay.
-
-S="${WORKDIR}/${PN}"
-
-java_prepare() {
-	perl -i -ne'print unless /<jalopy/../<\/jalopy>/ or /<taskdef.+name="jalopy"/../<\/taskdef>/ or /<include name="jalview-jalopy.xml"/' build.xml
-	find -name '*.jar' | egrep -v '(vamsas|axis|jaxrpc|roxes-ant-tasks|regex|xml-apis)' | xargs rm -v
-}
-
-src_install() {
-	java-pkg_dojar dist/*.jar
-
-	MY_CP=""
-	for i in $(cd dist; ls *.jar); do
-		MY_CP="${MY_CP}:${ROOT}usr/share/${PN}/lib/$i"
-	done
-	java-pkg_dolauncher jalview --main jalview.bin.Jalview \
-		--java_args "-cp ${MY_CP}:$(java-config -p ${EANT_GENTOO_CLASSPATH})"
-
-	use source && java-pkg_dosrc src
-#	use doc && java-pkg_dojavadoc something - no docs to be seen
-	dodoc README doc/*
-}
diff --git a/sci-biology/jalview/metadata.xml b/sci-biology/jalview/metadata.xml
deleted file mode 100644
index 3302123e5..000000000
--- a/sci-biology/jalview/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
-</pkgmetadata>