sci-biology/jalview: version bump

(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)

2 files changed, 0 insertions, 64 deletions

diff --git a/sci-biology/jalview/Manifest b/sci-biology/jalview/Manifest
index 368743ed7..f4c2fa2fd 100644
--- a/sci-biology/jalview/Manifest
+++ b/sci-biology/jalview/Manifest
@@ -1,6 +1,4 @@
-DIST jalview_2_4.tar.gz 11319073 RMD160 770f57a9c9b7822c0b13d0dfa46977b95ad8384a SHA1 f0f69b3b4716285aece7fc914df3a3133baf1abe SHA256 c4fe3a4b214ed7f06d48bd88fd53e068c2151390ec8004acd6705bea47b4918a
 DIST jalview_2_6_1.tar.gz 16315652 RMD160 984442c91fcee6abda565521ede9c20ef7a29cc1 SHA1 af38da24eb50298f86d22658100f35cf14f70a88 SHA256 65f211e5aff682b8bc3f36c0b24051c38fd1f66fe4e45bb94d20ee84320c8250
-EBUILD jalview-2.4.ebuild 1814 RMD160 8dda318d55d5dd6af2b7d411dccf8c8de05d9d37 SHA1 7fd5b0b50371a73655fbe227bdefc40f67566724 SHA256 cc4e0ad0e916ce6e3afc938f97e16fa8aca6151f6bf48154490661d1ac10ebcc
 EBUILD jalview-2.6.1.ebuild 1816 RMD160 e0e597f0f68dd947789a9e7b71139dfd51968634 SHA1 a404a60de33afea0b2c5bca3e46f30a2e6e388e9 SHA256 857b00e370f6750d9da5cf80f677c26e7c76dccc85e2f199143aa44f0daa7445
 MISC ChangeLog 567 RMD160 6f08f4799d1210764dac988cf6fc85e4552b2fee SHA1 c326236d18d212de6112d8a8600cfadb2763ee40 SHA256 45a3ddf974c79ff2d59f2c28a1d5a0adec7dad95f51a76201e4d5578e95abb26
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/jalview/jalview-2.4.ebuild b/sci-biology/jalview/jalview-2.4.ebuild
deleted file mode 100644
index 1e4e4ef25..000000000
--- a/sci-biology/jalview/jalview-2.4.ebuild
+++ /dev/null
@@ -1,62 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/beast-mcmc-1.5.1.ebuild,v 1.1 2009/10/02 21:47:11 weaver Exp $
-
-EAPI="2"
-
-EANT_GENTOO_CLASSPATH="jmol,castor-1.0,log4j,commons-logging,commons-discovery,wsdl4j,xerces-2,saaj,vecmath,javahelp,sun-jaf"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_BUILD_TARGET="distclean makedist"
-JAVA_PKG_IUSE="source doc"
-
-inherit java-pkg-2 java-ant-2 eutils
-
-DESCRIPTION="A multiple DNA sequence alignment editor"
-HOMEPAGE="http://www.jalview.org/"
-SRC_URI="http://www.jalview.org/source/jalview_2_4.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-COMMON_DEPS=">=sci-chemistry/jmol-11.0.2 <sci-chemistry/jmol-11.1
-	dev-java/castor:1.0
-	dev-java/log4j"
-DEPEND=">=virtual/jdk-1.5
-	${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.5
-	dev-java/commons-discovery
-	dev-java/commons-logging
-	dev-java/saaj
-	dev-java/xerces
-	dev-java/wsdl4j
-	dev-java/vecmath
-	dev-java/javahelp
-	dev-java/sun-jaf
-	dev-java/sun-javamail
-	${COMMON_DEPS}"
-
-# Note: dev-java/vecmath is in the java overlay.
-
-S="${WORKDIR}/${PN}"
-
-java_prepare() {
-	perl -i -ne'print unless /<jalopy/../<\/jalopy>/ or /<taskdef.+name="jalopy"/../<\/taskdef>/ or /<include name="jalview-jalopy.xml"/' build.xml
-	find -name '*.jar' | egrep -v '(vamsas|axis|jaxrpc|roxes-ant-tasks|regex|xml-apis)' | xargs rm -v
-}
-
-src_install() {
-	java-pkg_dojar dist/*.jar
-
-	MY_CP=""
-	for i in $(cd dist; ls *.jar); do
-		MY_CP="${MY_CP}:${ROOT}usr/share/${PN}/lib/$i"
-	done
-	java-pkg_dolauncher jalview --main jalview.bin.Jalview \
-		--java_args "-cp ${MY_CP}:$(java-config -p ${EANT_GENTOO_CLASSPATH})"
-
-	use source && java-pkg_dosrc src
-#	use doc && java-pkg_dojavadoc something - no docs to be seen
-	dodoc README doc/*
-}