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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-02-18 21:22:12 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-02-18 21:22:12 +0100 |
| commit | 1326710c5da26210005f4ec496b0c0a1af917077 (patch) | |
| tree | cc47a76c8ce182043b6ba873f0f34d0e979f036a /sci-biology/jtreeview/jtreeview-9999.ebuild | |
| parent | sci-biology/jtreeview: add deemed dependency on nanoxml (diff) | |
| download | sci-1326710c5da26210005f4ec496b0c0a1af917077.tar.gz sci-1326710c5da26210005f4ec496b0c0a1af917077.tar.bz2 sci-1326710c5da26210005f4ec496b0c0a1af917077.zip | |
sci-biology/jtreeview: add 3.0_alpha version which executes fine
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology/jtreeview/jtreeview-9999.ebuild')
| -rw-r--r-- | sci-biology/jtreeview/jtreeview-9999.ebuild | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/jtreeview/jtreeview-9999.ebuild b/sci-biology/jtreeview/jtreeview-9999.ebuild new file mode 100644 index 000000000..24c5427ae --- /dev/null +++ b/sci-biology/jtreeview/jtreeview-9999.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PERL_EXPORT_PHASE_FUNCTIONS=no +inherit java-pkg-2 git-r3 + +DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats" +HOMEPAGE="http://jtreeview.sourceforge.net + https://bitbucket.org/TreeView3Dev/treeview3" +EGIT_REPO_URI="https://bitbucket.org/TreeView3Dev/treeview3.git" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="" # builds and executes fines +IUSE="" + +DEPEND=">virtual/jdk-1.7:*" +RDEPEND="${DEPEND} + >=virtual/jre-1.7:*" + +src_prepare(){ + chmod u+x ./gradle* || die + eapply_user +} + +src_compile(){ + # work around gradle writing $HOME/.gradle, requiring $HOME/.git and $HOME/.m2/ + # https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965 + # make jure SDK-1.8 is available, JRE-1.8 is not enough + GRADLE_USER_HOME="${WORKDIR}" ./gradlew || die +} + +src_install(){ + cd build/libs || die + java-pkg_dojar *.jar + java-pkg_dolauncher ${PN} +} |