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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2020-12-30 19:39:36 +0100 |
|---|---|---|
| committer |   Aisha Tammy <gentoo@aisha.cc> | 2020-12-30 19:02:35 +0000 |
| commit | d7637214cd6c37456262bc62ff07eab1b1dae6b3 (patch) | |
| tree | 5a0f8e5909ffa789747d33e41b20d2ce9e6684ef /sci-biology/khmer/khmer-2.1.1.ebuild | |
| parent | sci-biology/screed: version bump 1.0.4 (diff) | |
| download | sci-d7637214cd6c37456262bc62ff07eab1b1dae6b3.tar.gz sci-d7637214cd6c37456262bc62ff07eab1b1dae6b3.tar.bz2 sci-d7637214cd6c37456262bc62ff07eab1b1dae6b3.zip | |
sci-biology/khmer: version bump 2.1.1
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Closes: https://github.com/gentoo/sci/pull/1009
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
Diffstat (limited to 'sci-biology/khmer/khmer-2.1.1.ebuild')
| -rw-r--r-- | sci-biology/khmer/khmer-2.1.1.ebuild | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/sci-biology/khmer/khmer-2.1.1.ebuild b/sci-biology/khmer/khmer-2.1.1.ebuild new file mode 100644 index 000000000..11c4231e8 --- /dev/null +++ b/sci-biology/khmer/khmer-2.1.1.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7,8,9} ) + +inherit distutils-r1 + +DESCRIPTION="In-memory K-mer counting in DNA/RNA/protein sequences" +HOMEPAGE="https://github.com/dib-lab/khmer" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +# ToDo: Fix this: +# ModuleNotFoundError: No module named 'khmer._khmer' +# even happens with --install option for enable_tests +RESTRICT="test" + +RDEPEND=" + sci-biology/screed[${PYTHON_USEDEP}] + dev-python/bz2file[${PYTHON_USEDEP}] +" + +distutils_enable_tests pytest + +python_prepare_all() { + # do not depend on pytest-runner + sed -i "/pytest-runner/d" setup.py || die + distutils-r1_python_prepare_all +} |