sci-biology/mRNAmarkup: version bump, fix fetch

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

1 files changed, 0 insertions, 57 deletions

diff --git a/sci-biology/mRNAmarkup/mRNAmarkup-1.0.ebuild b/sci-biology/mRNAmarkup/mRNAmarkup-1.0.ebuild
deleted file mode 100644
index dbdc3e368..000000000
--- a/sci-biology/mRNAmarkup/mRNAmarkup-1.0.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="Transcript annotation workflow"
-HOMEPAGE="http://brendelgroup.org/bioinformatics2go/mRNAmarkup.php"
-SRC_URI="http://www.brendelgroup.org/bioinformatics2go/Download/mRNAmarkup-10-3-2013.tar.gz" # 215MB
-
-# 0README in version 20131003 says it is 1.0
-
-LICENSE="mRNAmarkup"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND="
-	sci-biology/ncbi-tools++
-	sci-biology/estscan"
-# sci-biology/MuSeqBox has fetch-restrict and probably only works with old BLAST plaintex output
-# but, mRNAmarkup/INSTALL says:
-# 'For convenience, a copy of the MuSeqBox code distribution is included in directory src/contributed
-#
-# has a slightly modified estscan copy in src/contributed
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"/"${PN}"
-
-src_prepare(){
-	sed -e \
-		"s#configfile=$installdir/mRNAmarkup.conf#configfile=/usr/share/mRNAmarkup/etc/mRNAmarkup.conf#" \
-		-i bin/mRNAmarkup.orig || die
-	sed -e \
-		"s#$installdir/bin/ESTScan.conf#/usr/share/mRNAmarkup/etc/ESTScan.conf#" \
-		-i bin/mRNAmarkup.orig
-}
-
-src_compile(){
-	cd src
-	emake
-}
-
-src_install(){
-	mv bin/mRNAmarkup.orig bin/mRNAmarkup
-	sed -e 's#INSTALLDIR#/usr/share/mRNAmarkup/etc/#' -i bin/mRNAmarkup
-	dobin bin/mRNAmarkup bin/*.pl bin/dnatopro bin/genestat
-	# TODO: there are some more files in bin/ , sigh!
-	insinto /usr/share/mRNAmarkup/etc
-	mv mRNAmarkup.conf.orig mRNAmarkup.conf
-	doins mRNAmarkup.conf
-	doins bin/ESTScan.conf
-	dodoc 0README INSTALL
-}
-
-pkg_postinst(){
-	einfo "Please obtain a local copy of NCBI CDD dastabase"
-}