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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-08-02 17:21:43 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-08-02 17:21:43 +0200 |
| commit | c8acacd097c01e3fcdf254a41d17a6a25e1d648b (patch) | |
| tree | 00c44c2fc503bb63014e41ec06c9e667ce8e5c7a /sci-biology/maker | |
| parent | sci-biology/maker: add some comments to the ebuild (diff) | |
| download | sci-c8acacd097c01e3fcdf254a41d17a6a25e1d648b.tar.gz sci-c8acacd097c01e3fcdf254a41d17a6a25e1d648b.tar.bz2 sci-c8acacd097c01e3fcdf254a41d17a6a25e1d648b.zip | |
sci-biology/maker: roughly install correctly the main part
Package-Manager: portage-2.3.0
Diffstat (limited to 'sci-biology/maker')
| -rw-r--r-- | sci-biology/maker/maker-2.31.8.ebuild | 16 |
1 files changed, 13 insertions, 3 deletions
diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild index 21734c235..17661aaa5 100644 --- a/sci-biology/maker/maker-2.31.8.ebuild +++ b/sci-biology/maker/maker-2.31.8.ebuild @@ -4,6 +4,7 @@ EAPI=5 +PERL_EXPORT_PHASE_FUNCTIONS=no inherit eutils perl-module DESCRIPTION="A genome annotation viewer and pipeline for small eukaryota and prokaryota" @@ -36,7 +37,6 @@ DEPEND=" dev-perl/IO-Prompt dev-perl/Perl-Unsafe-Signals dev-perl/forks - dev-perl/forks-shared >=sci-biology/GAL-0.2.1 >=sci-biology/bioperl-1.6 sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ ) @@ -45,6 +45,7 @@ DEPEND=" sci-biology/augustus sci-biology/repeatmasker" RDEPEND="${DEPEND}" +# dev-perl/forks-shared ? # ============================================================================== # STATUS MAKER v2.31.8 @@ -114,9 +115,18 @@ src_install(){ find . -name mpi_evaluator | xargs rm || die mv bin/compare bin/compare_gff3_to_chado # rename as agreed by upstream, will be in maker-3 as well dobin bin/* + perl_set_version + insinto "${VENDOR_LIB}"/MAKER # uppercase, not "${PN}" + doins perl/lib/MAKER/*.pm + doman perl/man/*.3pm + insinto "${VENDOR_LIB}"/Parallel/Application + doins perl/lib/Parallel/Application/*.pm + insinto /usr/share/"${PN}"/data + doins data/* + # FIXME: find equivalent perl packages for lib/* contents, for example lib/GI.pm dodoc README INSTALL - insinto /usr/share/"{PN}"/GMOD/Apollo + insinto /usr/share/"${PN}"/GMOD/Apollo doins GMOD/Apollo/gff3.tiers - insinto /usr/share/"{PN}"/GMOD/JBrowse + insinto /usr/share/"${PN}"/GMOD/JBrowse doins GMOD/JBrowse/maker.css } |