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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-06-02 14:06:58 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-06-02 14:06:58 +0200 |
| commit | cb2f6200cc1de77fcdb6b3ac1b5b1d835ab4225f (patch) | |
| tree | 616902a149a2fd7ae1bcf9edc42f5f36efa70927 /sci-biology/ncbi-tools++ | |
| parent | Add new ebuild (diff) | |
| download | sci-cb2f6200cc1de77fcdb6b3ac1b5b1d835ab4225f.tar.gz sci-cb2f6200cc1de77fcdb6b3ac1b5b1d835ab4225f.tar.bz2 sci-cb2f6200cc1de77fcdb6b3ac1b5b1d835ab4225f.zip | |
sci-biology/ncbi-tools++: added a note about a taxonomy database add-on not yet installed by Gentoo
Diffstat (limited to 'sci-biology/ncbi-tools++')
| -rw-r--r-- | sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 3 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 5 |
3 files changed, 12 insertions, 0 deletions
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild index d4a50856d..3b19a9391 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild @@ -18,6 +18,8 @@ SRC_URI=" ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz" # http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz" +# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz +# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html LICENSE="public-domain" SLOT="0" IUSE=" @@ -271,6 +273,7 @@ src_configure() { # --without-static \ # --with-dll \ # --with-mt \ +# --with-openmp \ # --with-lfs \ # --prefix="${ED}"/usr \ # --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \ diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild index 7b3ba9e6b..89ae17635 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild @@ -18,6 +18,9 @@ SRC_URI=" ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz" # http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz" +# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz +# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html + LICENSE="public-domain" SLOT="0" IUSE=" @@ -281,6 +284,7 @@ src_configure() { # --without-static \ # --with-dll \ # --with-mt \ +# --with-openmp \ # --with-lfs \ # --prefix="${ED}"/usr \ # --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \ diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild index 2824e095f..802027609 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild @@ -18,6 +18,9 @@ SRC_URI=" ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/${MY_PV}/ncbi_cxx--${MY_PV}.tar.gz" # http://dev.gentoo.org/~jlec/distfiles/${PN}-${PV#0.}-asneeded.patch.xz" +# should also install ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz +# see http://www.biostars.org/p/76551/ and http://blastedbio.blogspot.cz/2012/05/blast-tabular-missing-descriptions.html + LICENSE="public-domain" SLOT="0" IUSE="berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X" @@ -283,6 +286,8 @@ src_configure() { --libdir="${ED}"/usr/$(get_libdir)/"${PN}" \ ${myconf} LDFLAGS="-Wl,--no-as-needed" \ || die + + # --with-openmp } src_compile() { |