New package

4 files changed, 88 insertions, 0 deletions

diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
new file mode 100644
index 000000000..e611ad790
--- /dev/null
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/ncbi-tools++
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  28 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
+  New package, ebuild written by me
+
diff --git a/sci-biology/ncbi-tools++/Manifest b/sci-biology/ncbi-tools++/Manifest
new file mode 100644
index 000000000..3295324dc
--- /dev/null
+++ b/sci-biology/ncbi-tools++/Manifest
@@ -0,0 +1,4 @@
+DIST ncbi_cxx--Dec_31_2008.tar.gz 13038519 RMD160 cd9427eae2db895cb509e6d3c6d61d5095b9f98f SHA1 ac3ffbcd1a7ab3d409f0480112657cb9cb956422 SHA256 79bdd721bde6a5347edc5a777b79621068d36ad7a7c8d99ef66b58dc58035bac
+EBUILD ncbi-tools++-2008.12.31.ebuild 1750 RMD160 7c5013ef49ffa71c0652bef2ca1e11ad047a56b5 SHA1 acfc0c29d132fe6aea8d64a76cbe63c2a4a691ab SHA256 ca378e9586cf3345f32f1077f6fa5ed8a6def538c3c0c68b3484f4bfcebab3a1
+MISC ChangeLog 223 RMD160 a57be8cda01f645a4a5985c43304e55d6531a54a SHA1 6dd7e594e16e93c4b4c884ab8bfc43b1d8553cea SHA256 ee0b81396c642b4e40e07316a618f46fc29397687628c151abafe371c51c2871
+MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/ncbi-tools++/metadata.xml b/sci-biology/ncbi-tools++/metadata.xml
new file mode 100644
index 000000000..3302123e5
--- /dev/null
+++ b/sci-biology/ncbi-tools++/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild
new file mode 100644
index 000000000..579165050
--- /dev/null
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8.ebuild,v 1.2 2009/03/15 17:58:50 maekke Exp $
+
+EAPI=2
+
+MY_P="ncbi_cxx--Dec_31_2008"
+
+DESCRIPTION="NCBI C++ Toolkit"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
+SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Dec_31_2008/${MY_P}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+IUSE="X unicode opengl gnutls -minimal"
+KEYWORDS="~amd64 ~x86"
+
+# wxGTK: must run eselect wxwindows after installing wxgtk or build will fail. Check and abort here.
+# dev-libs/xalan-c
+#	X? ( x11-libs/fltk
+#		x11-libs/wxGTK )
+DEPEND="!minimal? ( dev-libs/libxml2
+	dev-libs/libxslt
+	dev-db/sqlite:3
+	dev-libs/xerces-c
+	media-libs/libpng
+	media-libs/tiff
+	media-libs/jpeg
+	x11-libs/libXpm
+	dev-libs/lzo:2
+	app-text/sablotron
+	dev-libs/boost
+	unicode? ( dev-libs/icu )
+	opengl? ( media-libs/glut
+		media-libs/mesa )
+	gnutls? ( net-libs/gnutls ) )"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_configure() {
+	# econf fails
+	"${S}"/configure --without-debug --with-bin-release --prefix="${D}"/usr \
+		--libdir="${D}"/usr/lib64 \
+		--with-z="/usr" \
+		--with-bz2="/usr" \
+		--with-pcre="/usr" \
+		--with-openssl="/usr" \
+		--with-icu="/usr" \
+		--with-boost="/usr" \
+		--with-fltk="/usr" \
+		--with-mesa="/usr" \
+		--with-glut="/usr" \
+		--with-sablot="/usr" \
+		--without-wxwidgets \
+		|| die
+#		--with-wxwidgets="/usr" \
+}
+
+src_compile() {
+	emake all_r -C GCC412-Release64/build || die
+}
+
+src_install() {
+	emake install || die
+	# File collisions with sci-biology/ncbi-tools. TODO: check for more
+	(cd "${D}/usr"; rm -f bin/asn2asn bin/rpsblast bin/test_regexp lib64/libblast.a)
+}