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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-04-15 10:55:06 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-04-15 10:55:06 +0200 |
| commit | e6aadf2268b6d9cb675653b9c8e3717ca2597298 (patch) | |
| tree | 8994f43de0887c6921f0d368d137c6f972e151a7 /sci-biology/nesoni | |
| parent | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci (diff) | |
| download | sci-e6aadf2268b6d9cb675653b9c8e3717ca2597298.tar.gz sci-e6aadf2268b6d9cb675653b9c8e3717ca2597298.tar.bz2 sci-e6aadf2268b6d9cb675653b9c8e3717ca2597298.zip | |
sci-biology/nesoni: new package, needs some dev-lang/R -based packages to be installed
Package-Manager: portage-2.2.7
Diffstat (limited to 'sci-biology/nesoni')
| -rw-r--r-- | sci-biology/nesoni/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/nesoni/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/nesoni/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/nesoni/nesoni-0.117.ebuild | 33 |
4 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/nesoni/ChangeLog b/sci-biology/nesoni/ChangeLog new file mode 100644 index 000000000..1e9ab4202 --- /dev/null +++ b/sci-biology/nesoni/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/nesoni +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*nesoni-0.117 (15 Apr 2014) + + 15 Apr 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml, + +nesoni-0.117.ebuild: + sci-biology/nesoni: new package, needs some dev-lang/R -based packages to be + installed diff --git a/sci-biology/nesoni/Manifest b/sci-biology/nesoni/Manifest new file mode 100644 index 000000000..3ebc35afc --- /dev/null +++ b/sci-biology/nesoni/Manifest @@ -0,0 +1 @@ +DIST nesoni-0.117.tar.gz 2506715 SHA256 5456199bf4cab790271757d48cb4e9e0d9e52b0cf47ce4c376f22f3c18877ce4 SHA512 6be631c5f3fa65102899f6593bee5c4ca90cd6943485af258a5be4ea326c75dc7704c0c42a03004f7e14bb63f1da0efc13611b76a46d9fecf90eb9468cd111f5 WHIRLPOOL 92093093877c7a350c03e3a8a6920e8fcc7215c4d6081b966de03ee55148d7fd76242de8968615952100f4a8e840597b76c7528bc15ba5ccf3130f47446fe853 diff --git a/sci-biology/nesoni/metadata.xml b/sci-biology/nesoni/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/nesoni/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/nesoni/nesoni-0.117.ebuild b/sci-biology/nesoni/nesoni-0.117.ebuild new file mode 100644 index 000000000..9f14d79ea --- /dev/null +++ b/sci-biology/nesoni/nesoni-0.117.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 eutils + +DESCRIPTION="Analysis package for next-generation sequencing data and prepare for IGV display" +HOMEPAGE="http://www.vicbioinformatics.com/software.nesoni.shtml" +SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + sci-biology/shrimp + sci-biology/bowtie + sci-biology/mummer + sci-biology/biopython + sci-biology/picard + dev-lang/R" + + # sci-biology/freebayes + # SplitsTree4 + # BioConductor (limma, edgeR, goseq) + # seriation + # NMF |