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| author |   Horea Christian <chr@chymera.eu> | 2020-09-27 04:03:36 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2020-09-27 04:03:36 -0400 |
| commit | 4a9c779e4fe5ef995cb4f3a26a4cd0aed1e0789b (patch) | |
| tree | cbceb71a67d1a27220221d6120911a2050531f99 /sci-biology/oncotator/oncotator-1.9.2.0.ebuild | |
| parent | sci-biology/ngs_backbone: removed discontinued package (diff) | |
| download | sci-4a9c779e4fe5ef995cb4f3a26a4cd0aed1e0789b.tar.gz sci-4a9c779e4fe5ef995cb4f3a26a4cd0aed1e0789b.tar.bz2 sci-4a9c779e4fe5ef995cb4f3a26a4cd0aed1e0789b.zip | |
sci-biology/oncotator: rm discontinued package, now part of sci-biology/gatk
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology/oncotator/oncotator-1.9.2.0.ebuild')
| -rw-r--r-- | sci-biology/oncotator/oncotator-1.9.2.0.ebuild | 36 |
1 files changed, 0 insertions, 36 deletions
diff --git a/sci-biology/oncotator/oncotator-1.9.2.0.ebuild b/sci-biology/oncotator/oncotator-1.9.2.0.ebuild deleted file mode 100644 index 77f439b6d..000000000 --- a/sci-biology/oncotator/oncotator-1.9.2.0.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) # no python3+, issue #364 -inherit distutils-r1 - -DESCRIPTION="Annotate genetic variants in VCF" -HOMEPAGE="https://github.com/broadinstitute/oncotator" -SRC_URI="https://github.com/broadinstitute/oncotator/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="oncotator" -SLOT="0" -KEYWORDS="~amd64 ~x86" # breaks silently during install because of python syntax errors -IUSE="" - -RESTRICT="fetch" - -DEPEND=" - >=sci-biology/pysam-0.9.0 - >=dev-python/bcbio-gff-0.6.2 - >=dev-python/pyvcf-0.6.8 - >=dev-python/pandas-0.18.0 - >=sci-biology/biopython-1.66 - >=dev-python/numpy-1.11.0 - >=dev-python/cython-0.24 - >=dev-python/shove-0.6.6 - >=dev-python/sqlalchemy-1.0.12 - >=dev-python/nose-1.3.7 - >=dev-python/python-memcached-1.57 - >=dev-python/natsort-4.0.4 - >=dev-python/more-itertools-2.2 - >=dev-python/enum34-1.1.2 - dev-python/ngslib" -RDEPEND="${DEPEND}" |