sci-biology/sailfish: drop KEYWORDS, version bump

This package automatically downloads 3rd-party sources
instead of just compiling.

https://github.com/kingsfordgroup/sailfish/issues/80

Package-Manager: Portage-2.3.28, Repoman-2.3.9

1 files changed, 14 insertions, 4 deletions

diff --git a/sci-biology/sailfish/sailfish-9999.ebuild b/sci-biology/sailfish/sailfish-9999.ebuild
index 6c37b858e..f31f16197 100644
--- a/sci-biology/sailfish/sailfish-9999.ebuild
+++ b/sci-biology/sailfish/sailfish-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-inherit cmake-utils git-r3
+inherit cmake-utils git-r3 multilib
 
 DESCRIPTION="Rapid Mapping-based Isoform Quantification from RNA-Seq Reads"
 HOMEPAGE="http://www.cs.cmu.edu/~ckingsf/software/sailfish/"
@@ -14,14 +14,24 @@ LICENSE="GPL-3"
 SLOT="0"
 IUSE=""
 
-PATCHES=( "${FILESDIR}"/${PN}-0.9.1-no-boost-static.patch )
+PATCHES=( "${FILESDIR}"/${PN}-0.9.2-no-boost-static.patch )
 
 DEPEND="dev-libs/boost:0
 		dev-libs/jemalloc
-		dev-cpp/tbb"
+		dev-cpp/tbb
+		sci-biology/jellyfish:2"
 RDEPEND="${DEPEND}"
 
+# TODO: disable running wget/curl during src_compile
+# https://github.com/kingsfordgroup/sailfish/issues/80
+# contains bundled RapMap
+# contains bundled libdivsufsort-master
+# contains bundled libgff
+# contains bundled jellyfish-2.2.3
+# contains bundled sparsehash-2.0.2
+
 src_install() {
 	cmake-utils_src_install
 	rm -r "${ED}"/usr/tests || die
+	rm -f "${ED}"/usr/bin/jellyfish "${ED}"/usr/$(get_libdir)/libjellyfish || die
 }