Version bump per bug #311857, added description and longdescription to metadata

3 files changed, 58 insertions, 21 deletions

diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest
index 0c6b24a50..dc5973c0a 100644
--- a/sci-biology/samtools/Manifest
+++ b/sci-biology/samtools/Manifest
@@ -1,24 +1,5 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST samtools-0.1.7a.tar.bz2 364491 RMD160 a964ad31611c9b57a8979102a1ee0f579426c0f3 SHA1 886fc61af9efc28bf9aebf9bbb837b97dfdb4985 SHA256 d99151b0aa8ffeeb1e522d4968117bdb263c40a329d87b2da64e2134ec8e937f
 EBUILD samtools-0.1.7.ebuild 862 RMD160 6d774b8553df61b5e275c6de551aac8ee484e1f1 SHA1 7278848a63148cce1fadd5929d4a5afe4a88901a SHA256 8015ce8bbe7614f0b3be49a15ab2d8e7c5081d03fef29a7237724c2c55c327c4
+EBUILD samtools-0.1.7a.ebuild 1057 RMD160 7818bc4f01a4d91ed7301d265afee9c9e10cf999 SHA1 984b88afcb29985bfb848933e669b1f75f34ba53 SHA256 3636c9fb39bc0834401195924259eeef6fa818e8613148ce59b3b717c4a03458
 MISC ChangeLog 377 RMD160 42befda96dde634adfa6e3e898bc804bbba30952 SHA1 6c51d7b0ae9aec40c34c56b151a88d1348642265 SHA256 8cb77c498114aedd0a7f076e8bb3c9529aa8befe7e4d149f7fd4f5bccff0b406
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
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+MISC metadata.xml 505 RMD160 6a7d5d12e55200f3e63a275870268b7064fd842e SHA1 3bff0b99816aaff09686e47169c8b0db1a4d207d SHA256 b5d0dc6390a7100b27bab2efc240467e01c388039912666de644f57b8cc9e60c
diff --git a/sci-biology/samtools/metadata.xml b/sci-biology/samtools/metadata.xml
index 3302123e5..1f4e1a856 100644
--- a/sci-biology/samtools/metadata.xml
+++ b/sci-biology/samtools/metadata.xml
@@ -4,6 +4,10 @@
 	<maintainer>
 		<email>weaver@gentoo.org</email>
 		<name>Andrey Kislyuk</name>
+		<description>SAM Tools provide various utilities for manipulating alignments in the SAM format.</description>
 	</maintainer>
 	<herd>sci-biology</herd>
+	<longdescription lang="en">
+		SAM Tools provide various utilities for manipulating alignments in the SAM format.
+	</longdescription>
 </pkgmetadata>
diff --git a/sci-biology/samtools/samtools-0.1.7a.ebuild b/sci-biology/samtools/samtools-0.1.7a.ebuild
new file mode 100644
index 000000000..dafbafb95
--- /dev/null
+++ b/sci-biology/samtools/samtools-0.1.7a.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="SAM Tools provide various utilities for manipulating alignments in the SAM format"
+HOMEPAGE="http://samtools.sourceforge.net/"
+SRC_URI="http://downloads.sourceforge.net/project/samtools/samtools/0.1.7/samtools-0.1.7a.tar.bz2"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="zlib"
+
+DEPEND="sys-libs/zlib
+		sys-libs/ncurses"
+RDEPEND="${DEPEND}"
+
+src_unpack() {
+	unpack ${A}
+}
+
+src_prepare() {
+	cd ${W} || die
+	sed -i -e "s/-g -Wall -O2/${CFLAGS} -fPIC/" "${S}"/Makefile || die
+	sed -i -e "s/-g -Wall -O2/${CFLAGS} -fPIC/" "${S}"/misc/Makefile || die
+}
+
+src_compile(){
+	emake
+	emake razip
+}
+
+src_install(){
+	dobin razip samtools
+	for f in md5sum-lite md5fa maq2sam-short maq2sam-long wgsim; do
+		dobin misc/$f
+	done
+
+	for f in misc/*.pl; do
+		dobin $f
+	done
+
+	dolib libbam.a
+
+	insinto /usr/include
+	doins bam.h bgzf.h sam.h sam_header.h faidx.h bam_maqcns.h glf.h
+
+	mv samtools.txt samtools.1
+	doman samtools.1
+}