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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-25 20:52:27 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-25 20:52:27 +0100 |
| commit | 2a587647f03490b80841358dfed7deb62cfe3097 (patch) | |
| tree | 72d46e33cedd8d7959569e58aa76f2b61040b39a /sci-biology/sga | |
| parent | sci-libs/fast5: document what is still broken in the ebuild (diff) | |
| download | sci-2a587647f03490b80841358dfed7deb62cfe3097.tar.gz sci-2a587647f03490b80841358dfed7deb62cfe3097.tar.bz2 sci-2a587647f03490b80841358dfed7deb62cfe3097.zip | |
sci-biology/sga: add missing RDEPEND, more comments
Package-Manager: Portage-2.3.19, Repoman-2.3.6
Diffstat (limited to 'sci-biology/sga')
| -rw-r--r-- | sci-biology/sga/sga-9999.ebuild | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/sci-biology/sga/sga-9999.ebuild b/sci-biology/sga/sga-9999.ebuild index 38212a3e2..8ec029f94 100644 --- a/sci-biology/sga/sga-9999.ebuild +++ b/sci-biology/sga/sga-9999.ebuild @@ -19,6 +19,7 @@ DEPEND="dev-cpp/sparsehash sys-libs/zlib jemalloc? ( dev-libs/jemalloc )" RDEPEND="${DEPEND} + sci-biology/abyss python? ( sci-biology/pysam sci-biology/ruffus )" @@ -30,7 +31,14 @@ src_configure(){ } src_compile(){ - cd src || die + # https://github.com/AlgoLab/FastStringGraph/issues/1#issuecomment-345999596 + # https://github.com/jts/sga/issues/106 + # https://github.com/jts/sga/pull/110 + # https://github.com/jts/sga/issues/108 + # + # other unreviewed patches: + # https://github.com/jts/sga/issues/96 + cd src || die "Try -atd=g++-98, try gcc-5 or -std=c++03" default } |