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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-03-09 17:44:10 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-03-09 17:44:10 +0100 |
| commit | 53f3408793c23dd0612952d22bc4a6c599e2b295 (patch) | |
| tree | cab23cfcfe47dd13146230ce9d957de6ae968b23 /sci-biology/sickle | |
| parent | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci (diff) | |
| download | sci-53f3408793c23dd0612952d22bc4a6c599e2b295.tar.gz sci-53f3408793c23dd0612952d22bc4a6c599e2b295.tar.bz2 sci-53f3408793c23dd0612952d22bc4a6c599e2b295.zip | |
respect CC and CFLAGS; added an ebuild for latest release tarball, works
Package-Manager: portage-2.2.15
Diffstat (limited to 'sci-biology/sickle')
| -rw-r--r-- | sci-biology/sickle/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/sickle/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/sickle/sickle-1.33.ebuild | 36 | ||||
| -rw-r--r-- | sci-biology/sickle/sickle-9999.ebuild | 17 |
4 files changed, 57 insertions, 3 deletions
diff --git a/sci-biology/sickle/ChangeLog b/sci-biology/sickle/ChangeLog index 443ff95fa..4d539a201 100644 --- a/sci-biology/sickle/ChangeLog +++ b/sci-biology/sickle/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*sickle-1.33 (09 Mar 2015) + + 09 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +sickle-1.33.ebuild, + sickle-9999.ebuild: + respect CC and CFLAGS; added an ebuild for latest release tarball, works + 15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> sickle-9999.ebuild: correct package description diff --git a/sci-biology/sickle/Manifest b/sci-biology/sickle/Manifest new file mode 100644 index 000000000..570d99efb --- /dev/null +++ b/sci-biology/sickle/Manifest @@ -0,0 +1 @@ +DIST v1.33.tar.gz 631275 SHA256 eab271d25dc799e2ce67c25626128f8f8ed65e3cd68e799479bba20964624734 SHA512 94d9794861655c9d8688a4c71757ba93166f167ae529c5661998d287b93c6ccc9755d9e3db8d481bbd5dca4cf047f6266880a5fc1f8099e597bc857954404dcb WHIRLPOOL f54f911ddb58596c88aa2963a235a6c77f4b84d2c86f594329763c582763ffd7ccc86b28bf3d0126b9d8cd693c1a6cf1be05aa82d9521e5977b6ef0d01547a25 diff --git a/sci-biology/sickle/sickle-1.33.ebuild b/sci-biology/sickle/sickle-1.33.ebuild new file mode 100644 index 000000000..2288aeaeb --- /dev/null +++ b/sci-biology/sickle/sickle-1.33.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit eutils eutils toolchain-funcs + +[ "$PV" == "9999" ] && inherit git-r3 + +DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data from Illumina/Solexa" +HOMEPAGE="https://github.com/najoshi/sickle" +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/najoshi/sickle" + KEYWORDS="" +else + SRC_URI="https://github.com/najoshi/sickle/archive/v"${PV}".tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="MIT" +SLOT="0" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + sys-libs/zlib" + +src_prepare(){ + sed -e "s#-pedantic#-pedantic ${CFLAGS}#;s#gcc#"$(tc-getCC)"#" -i Makefile || die +} + +src_install(){ + dobin sickle + dodoc README.md +} diff --git a/sci-biology/sickle/sickle-9999.ebuild b/sci-biology/sickle/sickle-9999.ebuild index 022474e57..2288aeaeb 100644 --- a/sci-biology/sickle/sickle-9999.ebuild +++ b/sci-biology/sickle/sickle-9999.ebuild @@ -4,21 +4,32 @@ EAPI=5 -inherit eutils git-r3 +inherit eutils eutils toolchain-funcs + +[ "$PV" == "9999" ] && inherit git-r3 DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data from Illumina/Solexa" HOMEPAGE="https://github.com/najoshi/sickle" -EGIT_REPO_URI="https://github.com/najoshi/sickle" +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/najoshi/sickle" + KEYWORDS="" +else + SRC_URI="https://github.com/najoshi/sickle/archive/v"${PV}".tar.gz" + KEYWORDS="~amd64" +fi LICENSE="MIT" SLOT="0" -KEYWORDS="~amd64" IUSE="" DEPEND="" RDEPEND="${DEPEND} sys-libs/zlib" +src_prepare(){ + sed -e "s#-pedantic#-pedantic ${CFLAGS}#;s#gcc#"$(tc-getCC)"#" -i Makefile || die +} + src_install(){ dobin sickle dodoc README.md |