diff options
| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-03-23 20:41:54 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-03-23 20:41:54 +0100 |
| commit | 11b15cf806fb81c066602094002587160af5cf67 (patch) | |
| tree | 6d336d68470a2dd258633ea25948616a9e7996b4 /sci-biology/skewer-bin | |
| parent | sci-biology/BBmap: a skeleton for a new package, needs help from java team fo... (diff) | |
| download | sci-11b15cf806fb81c066602094002587160af5cf67.tar.gz sci-11b15cf806fb81c066602094002587160af5cf67.tar.bz2 sci-11b15cf806fb81c066602094002587160af5cf67.zip | |
sci-biology/skewer-bin: new package
Package-Manager: portage-2.2.7
Diffstat (limited to 'sci-biology/skewer-bin')
| -rw-r--r-- | sci-biology/skewer-bin/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/skewer-bin/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/skewer-bin/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild | 25 |
4 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/skewer-bin/ChangeLog b/sci-biology/skewer-bin/ChangeLog new file mode 100644 index 000000000..a00543cda --- /dev/null +++ b/sci-biology/skewer-bin/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/skewer-bin +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*skewer-bin-0.1.104 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml, + +skewer-bin-0.1.104.ebuild: + sci-biology/skewer-bin: new package diff --git a/sci-biology/skewer-bin/Manifest b/sci-biology/skewer-bin/Manifest new file mode 100644 index 000000000..6b0fa1efb --- /dev/null +++ b/sci-biology/skewer-bin/Manifest @@ -0,0 +1,2 @@ +DIST skewer-0.1.104-linux-x86_64 97877 SHA256 c0e8cf3530d7a34be23532eb975c1f56a27795aeb3bc75e554e88435bbe9a663 SHA512 c2a4b73c4a4c87528e9a33c16d839aa2a20771c34b38e0593ab3caf654fee47463c8eb63ceb29c6eee13ffc75657d3e69da5afc3c9fd86479f74a1888652fd05 WHIRLPOOL 9d9ca26dcf0bae9eef82d862404c468099cebb8a23edc3d6bcaf48d1afe7f95fff63ccf8d00c963a860157595187c99751b87d3279d119a17534655b92428d5d +DIST srna-scripts-0.1.2.tar.gz 3811 SHA256 a9d6cb4f232dfa30fe6c74870b80ef5e0c4617126e8788d10a68b66eb0444303 SHA512 18b65c182cbd054a5ffada386cbeeb7ea26bab27e98e9586b9b30d68b028fc139f74df88a42d8b7142485e18b72d5275cde2dc3e0567a7567c514cb5459eeea0 WHIRLPOOL 2f03775fe510f35f53b4fbcbb5d1216aad33dc3ef080f852bfe92db608328d14bd3f966bf5410224ba74e615b70b4dadf399b9a483e03c3b4648c29ba94f3da7 diff --git a/sci-biology/skewer-bin/metadata.xml b/sci-biology/skewer-bin/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/skewer-bin/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild new file mode 100644 index 000000000..23afc2e54 --- /dev/null +++ b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3 + +DESCRIPTION="Adaptor and MID removal / trimming tool, also for Illumina-oriented paired-end reads" +HOMEPAGE="http://sourceforge.net/projects/skewer" +SRC_URI="http://sourceforge.net/projects/skewer/files/Binaries/skewer-0.1.104-linux-x86_64 + http://sourceforge.net/projects/skewer/files/Scripts/srna-scripts-0.1.2.tar.gz" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/perl" + +src_install() { + cp "${DISTDIR}"/skewer-* skewer || die + dobin *.pl || die + dobin skewer || die "Failed to install clview binary" +} |