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author | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2012-02-06 19:26:13 +0100 |
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committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2012-02-06 19:26:13 +0100 |
commit | 7916128a6fb3f84c3c63e2c99dbe2e3e4d93d2e8 (patch) | |
tree | 9316d191e0e02dc27aa54b5f76060fa9aa2985ad /sci-biology/sra_sdk | |
parent | two more Makefiles needed a DESTDIR patch, in conjunction with an ugly symlin... (diff) | |
download | sci-7916128a6fb3f84c3c63e2c99dbe2e3e4d93d2e8.tar.gz sci-7916128a6fb3f84c3c63e2c99dbe2e3e4d93d2e8.tar.bz2 sci-7916128a6fb3f84c3c63e2c99dbe2e3e4d93d2e8.zip |
sci-biology/sra_sdk-2.1.6: dropping an old crap
Diffstat (limited to 'sci-biology/sra_sdk')
-rw-r--r-- | sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild | 73 |
1 files changed, 0 insertions, 73 deletions
diff --git a/sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild b/sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild deleted file mode 100644 index 4e08fb375..000000000 --- a/sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild +++ /dev/null @@ -1,73 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=3 - -DESCRIPTION="NCBI Sequence Read Archive (SRA) sratoolkit" -HOMEPAGE="http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=faspftp_runs_v1&m=downloads&s=download_sra" -SRC_URI="http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sra_sdk-"${PV}".tar.gz" -# http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sratoolkit.2.0.1-centos_linux64.tar.gz - -LICENSE="public-domain" -SLOT="0" -#KEYWORDS="" -KEYWORDS="~amd64 ~x86" -IUSE="static" - -DEPEND="app-shells/bash - sys-libs/zlib - app-arch/bzip2 - dev-libs/libxml2" -RDEPEND="${DEPEND}" - -# upstream says: -# icc, icpc are supported: tested with 11.0 (64-bit) and 10.1 (32-bit), 32-bit 11.0 does not work - -src_compile(){ - # -I/usr/include/libxml2 - # -I/var/tmp/portage/sci-biology/sra_sdk-2.0.1/work/sra_sdk-2.0.1/interfaces/os/unix - LIBXML_INCLUDES="/usr/include/libxml2" make -j1 OUTDIR="${WORKDIR}"/objdir out LIBDIR=/usr/lib64 DESTDIR="${D}" || die - LIBXML_INCLUDES="/usr/include/libxml2" make -j1 OUTDIR="${WORKDIR}"/objdir LIBDIR=/usr/lib64 DESTDIR="${D}" || die - - # COMP env variable may have 'GCC' or 'ICC' values - if use static; then - emake static LIBDIR=/usr/lib64 DESTDIR="${D}" - else - emake dynamic LIBDIR=/usr/lib64 DESTDIR="${D}" - fi -} - -src_install(){ - # for details see "${WORKDIR}"/sra_sdk-2.1.6/README-build - - # BUG: at the moment every binary is installed three times, e.g.: - # -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump - # -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump.2 - # -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump.2.1.6 - if use amd64; then - dobin "${WORKDIR}"/objdir/linux/pub/gcc/x86_64/bin/* - insinto /usr/bin/ncbi - dobin "${WORKDIR}"/objdir/linux/pub/gcc/x86_64/bin/ncbi/* - elif use x86; then - dobin "${WORKDIR}"/objdir/linux/pub/gcc/i386/bin/* - insinto /usr/bin/ncbi - dobin "${WORKDIR}"/objdir/linux/pub/gcc/i386/bin/ncbi/* - fi - - # mkdir -p ${D}/usr/bin || die - # for f in ${W}/objdir/linux/rel/gcc/i386/bin/*; do if [ ! -l "$f" ]; then cp "$f" ${D}/usr/bin || die "copy failed" ; fi; done - - # looks the binaries have the folllowing libs statically linked in so we do NOT need these files - # mkdir -p ${D}/usr/ilib || die - # dolib ${W}/objdir/linux/rel/gcc/i386/ilib/* - # insinto "${D}"/usr/lib/ncbi - # doins ${W}/objdir/linux/rel/gcc/i386/ilib/ncbi/* - - # mkdir -p ${D}/usr/lib || die - # dolib ${W}/objdir/linux/rel/gcc/i386/lib/* - # insinto "${D}"/usr/lib/ncbi - # doins ${W}/objdir/linux/rel/gcc/i386/lib/ncbi/* - - # same for mod/ and wmod/ subdirs -} |