[sci-biology/tgi-tools] QA fixes

(Portage version: 2.1.8.3/git/Linux x86_64)
 (Signed Manifest commit)

4 files changed, 36 insertions, 9 deletions

diff --git a/sci-biology/tgi-tools/ChangeLog b/sci-biology/tgi-tools/ChangeLog
index 9c5619c04..5489da9e9 100644
--- a/sci-biology/tgi-tools/ChangeLog
+++ b/sci-biology/tgi-tools/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/tgi-tools
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  27 Jun 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
+  tgi-tools-0.1.ebuild, metadata.xml:
+  QA fixes
+
   27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +tgi-tools-0.1.ebuild:
   Mass import from sunrise
 
diff --git a/sci-biology/tgi-tools/Manifest b/sci-biology/tgi-tools/Manifest
index 443c95624..019d95227 100644
--- a/sci-biology/tgi-tools/Manifest
+++ b/sci-biology/tgi-tools/Manifest
@@ -1,3 +1,6 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 DIST cdbfasta.tar.gz 23470 RMD160 d587deaac94eced97728b0596022ea5e6a1bc75e SHA1 c7455ad2ac92cd1ee1293f0100fd871d71e4d630 SHA256 6862061d923f49579568e62be06bf434e79dbb56dfafe573353b4eb7d8ab9c9c
 DIST mdust.tar.gz 7526 RMD160 c04a6ba5a56724bfee70b8fe31f0bf4132b74885 SHA1 8885f206d61a76c6623c4115af02793bb52911c4 SHA256 9722806920fc6772dc92f99e7a59554c5f7c35b596dca0df9ed03ff2e5c6440d
 DIST nrcl.tar.gz 13151 RMD160 65f2e829fcf2da0134873eaa13098995b4472e15 SHA1 a9bf20a6f0f10201a03fb51644fa64e2519abd84 SHA256 3402a3efb38e3c7320831ca07e228374bbbba34d5b8a161446a7fc0bf4397808
@@ -9,6 +12,23 @@ DIST tclust.tar.gz 8864 RMD160 e77a8ce86fa779bbce7c46efbce2245ec7735681 SHA1 357
 DIST tgi_cpp_library.tar.gz 58212 RMD160 a85d0e0232a3956f93e521a73075d81d5ecfaaf3 SHA1 1039291f5f0ca617d025bcfacf4f271a3a225001 SHA256 555a81a63233d725868f6179cf3f5d74cceaa040058e2e4ded20f95487c89875
 DIST trimpoly.tar.gz 12562 RMD160 7345812dbbcea3d7fd2018ba1b04254863d171a4 SHA1 3558e9663cba6e6c179ca6f9a019f95d7aa1d4db SHA256 aa8f4a47d45ee534a15edf8e325f341a72d0ce0fa659ccfd8591c15bef44da4f
 DIST zmsort.tar.gz 5537 RMD160 cf6599dbd417f5ea50ec41db7909a2415ac28e68 SHA1 27a88033d99da8671fcae598f21e5b8cb7089e40 SHA256 32c5b72e22ae0fbd1784174dcff74e1a40817e29e98b2a0a32a21d83ace6b7fd
-EBUILD tgi-tools-0.1.ebuild 1556 RMD160 3a3782fd845e309a5a5cef84a870d7529581f684 SHA1 1fb231c11bf653fd7645380cb0c4fbbeb2478f0a SHA256 d5548b8ea3e0600a731e8bf9b186dd4027bcc7422b0960a17e072041e817d15e
-MISC ChangeLog 697 RMD160 d873f6a3192e71e8499646192ef725f58987ba96 SHA1 5f916419a43396c3ecd92b93f1ec732ca4f65999 SHA256 2111f501e89d7be9aa417de1aa13d2163740c3b7284d93c07db3924385e5ed57
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
+EBUILD tgi-tools-0.1.ebuild 1564 RMD160 176322dde84e3891c7c03d2ed0fd7e00bdf60871 SHA1 096c9202b8511b73fbb3d39eb3188207bbfcf4d4 SHA256 ff357cc0105a05c12b11c9d9368f55506d5dec11b9c39388fa3d327a1e8bebe6
+MISC ChangeLog 813 RMD160 42b9b114f638a4004f152022a07d9ee5bdc7a07e SHA1 0c5f37202c3431c99a94329becb456a4f7da0cf8 SHA256 18d92b494c7f7ecc013106f90f933f81b973c4bbdaaca660c6f0fea09bbb032d
+MISC metadata.xml 269 RMD160 522f6f8ac5dda419d6a4d85f474470268b9f6b92 SHA1 0c4d2df207c3368aea42c4ec37b95989bb5f47ad SHA256 f39d9f3d9a1b86fe6136d5ee94f27f7c42e9e9bef1e2bb02747234d06264db46
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diff --git a/sci-biology/tgi-tools/metadata.xml b/sci-biology/tgi-tools/metadata.xml
index 7e3286984..b48058b17 100644
--- a/sci-biology/tgi-tools/metadata.xml
+++ b/sci-biology/tgi-tools/metadata.xml
@@ -2,4 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 <herd>maintainer-wanted</herd>
+<use>
+<flag name="pvm">Build the parallel multi-FASTA file processing tool using PVM</flag>
+</use>
 </pkgmetadata>
diff --git a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild b/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
index 9a50c4bb3..e5bfcdb1a 100644
--- a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
+++ b/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2007 Gentoo Foundation
+# Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -29,12 +29,12 @@ src_unpack() {
 }
 
 src_compile() {
-	sed -i 's/use Mailer;/#use Mailer;/' ${S}/seqclean/seqclean
-	sed -i 's/-V\t\tverbose/-V\t\tverbose\\/' ${S}/zmsort/zmsort.cpp
+	sed -i 's/use Mailer;/#use Mailer;/' "${S}"/seqclean/seqclean
+	sed -i 's/-V\t\tverbose/-V\t\tverbose\\/' "${S}"/zmsort/zmsort.cpp
 	# TODO: fix error in nrcl
 	for i in cdbfasta mdust psx sclust tclust trimpoly zmsort $(use pvm && echo pvmsx); do
-		sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' ${S}/${i}/Makefile
-		cd ${S}/${i} || die "cd ${i} failed"
+		sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' "${S}"/${i}/Makefile
+		cd "${S}"/${i} || die "cd ${i} failed"
 		emake || die "emake failed in ${i}"
 	done
 }