new package sci-biology/trf

4 files changed, 55 insertions, 0 deletions

diff --git a/sci-biology/trf/ChangeLog b/sci-biology/trf/ChangeLog
new file mode 100644
index 000000000..bb539ea24
--- /dev/null
+++ b/sci-biology/trf/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/trf
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  19 Feb 2009; weaver <weaver@gentoo.org> ChangeLog:
+  New package sci-biology/trf, ebuild written by me
+
diff --git a/sci-biology/trf/Manifest b/sci-biology/trf/Manifest
new file mode 100644
index 000000000..0cd12929a
--- /dev/null
+++ b/sci-biology/trf/Manifest
@@ -0,0 +1,4 @@
+DIST trf400.linux.exe 87767 RMD160 de28ff3dd895c285bcb76a045625a10490ca6d26 SHA1 9f6de58cb050cc7b80b794aa10aeb7072913514b SHA256 903f408f56666ab193a1ad001785d1d1db9d068f78b56ce1ff09a9805d6cf6d5
+EBUILD trf-4.0.ebuild 837 RMD160 decdbe8298801672e43d1c9cd09610a0e3758367 SHA1 1d49450a60f7f621080bf4c66eb01ce027a3f60a SHA256 cb64add492029facbb182ebb3d76a5b5d2a1b8593198f40605f07162f7f61fba
+MISC ChangeLog 222 RMD160 959b61e86f184d9306806f44f6601f848cbb7ece SHA1 36ed796d2b3a9146647aee3d97116d198d9bdad9 SHA256 255ee50b0c54e58ae505ad99516a8879572a57c05634a3742203df6bb498f3fe
+MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/trf/metadata.xml b/sci-biology/trf/metadata.xml
new file mode 100644
index 000000000..3302123e5
--- /dev/null
+++ b/sci-biology/trf/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/trf/trf-4.0.ebuild b/sci-biology/trf/trf-4.0.ebuild
new file mode 100644
index 000000000..377b9e1e3
--- /dev/null
+++ b/sci-biology/trf/trf-4.0.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit eutils
+
+DESCRIPTION="Tandem Repeats Finder"
+HOMEPAGE="http://tandem.bu.edu/trf/trf.html"
+SRC_URI="http://tandem.bu.edu/trf/downloads/trf400.linux.exe"
+
+LICENSE="as-is"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND=""
+# gtk? ( x11-libs/gtk+ ) x11-libs/pango[X]
+
+S="${WORKDIR}"
+
+src_unpack() {
+	cp "${DISTDIR}/trf400.linux.exe" "${S}"
+}
+
+src_install() {
+	exeinto /opt/${PN}
+	doexe trf400.linux.exe || die
+	dosym /opt/${PN}/trf400.linux.exe /usr/bin/trf || die
+	# GTK version (http://tandem.bu.edu/trf/downloads/trf400.linuxgtk.exe) has broken linking
+	#if use gtk; then
+	#	doexe trf400.linuxgtk.exe || die
+	#	make_desktop_entry /opt/${PN}/trf400.linuxgtk.exe "Tandem Repeats Finder" || die
+	#fi
+}