diff options
| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-03-23 23:36:38 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-03-23 23:36:38 +0100 |
| commit | 0097320955e9522a3b7b082a9ec3aa803dae2a0e (patch) | |
| tree | bcf5833ecf300642ac2417c18ba27cc175e9aa28 /sci-biology | |
| parent | sci-biology/eval: new package; needs perl team help to install this evil pack... (diff) | |
| download | sci-0097320955e9522a3b7b082a9ec3aa803dae2a0e.tar.gz sci-0097320955e9522a3b7b082a9ec3aa803dae2a0e.tar.bz2 sci-0097320955e9522a3b7b082a9ec3aa803dae2a0e.zip | |
sci-biology/inGAP-bin: new package; needs java team help
Package-Manager: portage-2.2.7
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/inGAP-bin/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/inGAP-bin/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild | 39 | ||||
| -rw-r--r-- | sci-biology/inGAP-bin/metadata.xml | 9 |
4 files changed, 58 insertions, 0 deletions
diff --git a/sci-biology/inGAP-bin/ChangeLog b/sci-biology/inGAP-bin/ChangeLog new file mode 100644 index 000000000..c573f62fc --- /dev/null +++ b/sci-biology/inGAP-bin/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/inGAP-bin +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*inGAP-bin-3.0.1 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +inGAP-bin-3.0.1.ebuild, +metadata.xml: + sci-biology/inGAP-bin: new package; needs java team help diff --git a/sci-biology/inGAP-bin/Manifest b/sci-biology/inGAP-bin/Manifest new file mode 100644 index 000000000..034d64ce4 --- /dev/null +++ b/sci-biology/inGAP-bin/Manifest @@ -0,0 +1 @@ +DIST inGAP_3_0_1.tgz 11581010 SHA256 71eaba294b30d85b6cc8431e778f92593419955d58f32118a6968e9551c27ff7 SHA512 914c26c65e3b063cf88f52546f2581fe188d90972db9ac89a26c0631908d92c6ddfbdde7050db780241d3b0e9935419a02a33b738c33933343658bdfb705e49f WHIRLPOOL e0d9243e5387990d09170b39becb6886f2747f38fc3cde2ab2ca12d457f621079e5b3b574125ea09b3634c0b4410cb7644445ba1e63fbf2e7017442e06ebf647 diff --git a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild b/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild new file mode 100644 index 000000000..0c7903c13 --- /dev/null +++ b/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3 + +MY_PV="3_0_1" +S="${WORKDIR}"/inGAP_"${MY_PV}" + +DESCRIPTION="Detect SNPs and indels from Next-gen sequences using a Bayesian algorithm" +HOMEPAGE="http://sites.google.com/site/nextgengenomics/ingap + http://sourceforge.net/projects/ingap/" +SRC_URI="http://sourceforge.net/projects/ingap/files/ingap/v"${PV}"/inGAP_"${MY_PV}".tgz" + +LICENSE="LGPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-java/jfreechart + dev-java/swing-layout + dev-java/jcommon + dev-java/itext + dev-java/bytecode + dev-java/biojava + dev-java/absolutelayout" # gnujaxp ? + +src_install(){ + dobin inGAP.jar || die + # dobin external/bin/{primer3_core, run_cpp, trf} + mv manual.pdf inGAP_Manual.pdf || die + dodoc inGAP_Manual.pdf || die + insinto /usr/share/inGAP + doins doc/manual.htm + insinto /usr/share/inGAP/manual_files + doins doc/manual_files/*.png +} diff --git a/sci-biology/inGAP-bin/metadata.xml b/sci-biology/inGAP-bin/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/inGAP-bin/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |