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| author |   Horea Christian <chr@chymera.eu> | 2020-09-27 03:56:32 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2020-09-27 03:56:32 -0400 |
| commit | 048c61f03abe33efb441bb6aa06514e10e7629de (patch) | |
| tree | d7933349689fd38585641fe61059fa7151f16920 /sci-biology | |
| parent | sci-biology/nesoni: removed package with deprecated dep (diff) | |
| download | sci-048c61f03abe33efb441bb6aa06514e10e7629de.tar.gz sci-048c61f03abe33efb441bb6aa06514e10e7629de.tar.bz2 sci-048c61f03abe33efb441bb6aa06514e10e7629de.zip | |
sci-biology/barrnap: version bump 0.9
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/barrnap/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/barrnap/barrnap-0.3.ebuild | 40 | ||||
| -rw-r--r-- | sci-biology/barrnap/barrnap-0.9.ebuild (renamed from sci-biology/barrnap/barrnap-0.4.ebuild) | 8 |
3 files changed, 5 insertions, 46 deletions
diff --git a/sci-biology/barrnap/Manifest b/sci-biology/barrnap/Manifest index 8f18d6c45..af109a6e0 100644 --- a/sci-biology/barrnap/Manifest +++ b/sci-biology/barrnap/Manifest @@ -1,2 +1 @@ -DIST barrnap-0.3.tar.gz 4102752 BLAKE2B d904f7207a22073de36dcab8d45cf2c5c9740af5f16883621b9989bd036376b8dc727f28f7d7412bebef3fb87c8d23c9e0cb1be274433187819cacd38ceae28b SHA512 4b67e995b335e9e8397481c60058bf3a21044e1829781f277027ce2b3e4836c17c30dc2453c6d7d3c00ef8c07394fc5cb46719bfd397e66db7d4ba3c5bfdd514 -DIST barrnap-0.4.tar.gz 8053614 BLAKE2B a0953ac21dbf7a762c0211433550f9b92ddea39192de3e77ba8ad1c6d3e1b09f08f5cf947a63ca6e67dc6cd5144481798b3ad04962b697c0dd54e0b30d1fb52d SHA512 77490398978df73cd2c5529403674cdb2142fa57506a997a95bd4c90a897756554a2d10598e28bac396b8b611b8c9b1c6eaf3bfb4e0d22724c4175d18c2e16ea +DIST barrnap-0.9.tar.gz 11837541 BLAKE2B 72f404dbe7f7d01cf1bfffc2c8a6e33a9b3efed04b51179433343672f1296dd1009870ccabb2123382aab0dcd1d41293fdf25f59df515b752497decce0130565 SHA512 7824a8a5c1c383f2e85210c9d24d6aa7c69e5290d4ebb0fb18090def78719ed30e84179e460a47379a599e4736216f740ee38bfc6ca38259df2efde5cd63235c diff --git a/sci-biology/barrnap/barrnap-0.3.ebuild b/sci-biology/barrnap/barrnap-0.3.ebuild deleted file mode 100644 index be281351f..000000000 --- a/sci-biology/barrnap/barrnap-0.3.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit perl-module - -DESCRIPTION="Predict Bacterial and Archaeal rRNA genes and output in GFF3 format" -HOMEPAGE="http://www.vicbioinformatics.com/software.barrnap.shtml" -SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# contains bundled binaries of hmmer-3.1 (dev version) -# needs >=perl-5.6 - -DEPEND="" -RDEPEND="${DEPEND} - dev-lang/perl:= - sci-biology/nesoni" - -src_install(){ - # the below recreates the whole layout - insinto /usr/share/"${PN}" - doins barrnap - chmod a+rx "${ED}"/usr/share/"${PN}"/barrnap - insinto /usr/share/"${PN}"/binaries - doins binaries/nhmmer.linux - chmod a+rx "${ED}"/usr/share/"${PN}"/binaries/nhmmer.linux - insinto /usr/share/"${PN}"/db - doins db/* - insinto /usr/share/examples - doins examples/* - - echo PATH=/usr/share/"${PN}":$PATH > "${S}"/99barrnap - doenvd "${S}"/99barrnap -} diff --git a/sci-biology/barrnap/barrnap-0.4.ebuild b/sci-biology/barrnap/barrnap-0.9.ebuild index f4559fddc..e60736e57 100644 --- a/sci-biology/barrnap/barrnap-0.4.ebuild +++ b/sci-biology/barrnap/barrnap-0.9.ebuild @@ -1,13 +1,13 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit perl-module DESCRIPTION="Predict Bacterial and Archaeal rRNA genes and output in GFF3 format" HOMEPAGE="http://www.vicbioinformatics.com/software.barrnap.shtml" -SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz" +SRC_URI="https://github.com/tseemann/barrnap/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="GPL-3" SLOT="0" @@ -20,7 +20,7 @@ IUSE="" DEPEND="" RDEPEND="${DEPEND} dev-lang/perl:= - sci-biology/nesoni" + " src_install(){ # the below recreates the whole layout |