newer version in the tree

Signed-off-by: Justin Lecher <jlec@gentoo.org>

4 files changed, 0 insertions, 92 deletions

diff --git a/sci-biology/wgs-assembler/ChangeLog b/sci-biology/wgs-assembler/ChangeLog
deleted file mode 100644
index 24fb71d30..000000000
--- a/sci-biology/wgs-assembler/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/wgs-assembler
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*wgs-assembler-7.0 (27 Jan 2012)
-
-  27 Jan 2012; mmokrejs@fold.natur.cuni.cz +metadata.xml,
-  +wgs-assembler-7.0.ebuild:
-  sci-biology/wgs-assembler-7.0: version bump, would be nice if we could stop
-  compilation of the kmer/ subdir (an r1916 snapshot) and DEPEND on the external
-  http://kmer.sourceforge.net complete bundle instead
-
diff --git a/sci-biology/wgs-assembler/Manifest b/sci-biology/wgs-assembler/Manifest
deleted file mode 100644
index dc9eb4bc9..000000000
--- a/sci-biology/wgs-assembler/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST wgs-7.0.tar.bz2 1952253 SHA256 fee425cf2ec6aec6e98d580cc7e43b53eb37abd7ca14e3edc1f953d2c09b3a6c SHA512 e5ef1d4533e3dd17d13c6aca9631f5300768a258f8241f3f7f90de3785bf7a340b6896febe335682c282434c9983bc4a02fe2128a5b0e7ec415dd65e0fe400ba WHIRLPOOL a158b882e51e8ff80fa4e6bcbe4322125fce65fc64900407882a728de9465b778f59cc6d543142ca65a255295e66e89e5303774eeef7a66362c5f492ae99a92b
diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml
deleted file mode 100644
index 3302123e5..000000000
--- a/sci-biology/wgs-assembler/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
-</pkgmetadata>
diff --git a/sci-biology/wgs-assembler/wgs-assembler-7.0.ebuild b/sci-biology/wgs-assembler/wgs-assembler-7.0.ebuild
deleted file mode 100644
index b75a5b79a..000000000
--- a/sci-biology/wgs-assembler/wgs-assembler-7.0.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-6.1.ebuild,v 1.3 2011/03/20 20:19:27 weaver Exp $
-
-EAPI="2"
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="A de novo whole-genome shotgun DNA sequence assembler, also known as the Celera Assembler and CABOG"
-HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/"
-SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="x11-libs/libXt
-	!x11-terms/terminator"
-RDEPEND="${DEPEND}
-	app-shells/tcsh
-	dev-perl/Log-Log4perl"
-
-S="${WORKDIR}/wgs-${PV}"
-
-src_configure() {
-	sed -i -e "s/CC *= *gcc/CC = $(tc-getCC)/" \
-		-e "s/CXX *= *g++/CXX = $(tc-getCXX)/" \
-		"${S}"/src/c_make.as || die
-	sed -i -e "s/CC *:=.*/CC := $(tc-getCC)/" \
-		-e "s/CXX *:=.*/CXX := $(tc-getCXX)/" \
-		"${S}"/kmer/configure.sh || die
-	cd "${S}/kmer"
-	./configure.sh || die
-}
-
-src_compile() {
-	# not really an install target
-	emake -C kmer -j1 install || die
-	emake -C src -j1 SITE_NAME=LOCAL || die
-}
-
-src_install() {
-	OSTYPE=$(uname)
-	MACHTYPE=$(uname -m)
-	MACHTYPE=${MACHTYPE/x86_64/amd64}
-	MY_S="${OSTYPE}-${MACHTYPE}"
-	sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die
-
-	sed -i '/sub getBinDirectory ()/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die
-	sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die
-	sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die
-
-	dobin kmer/${MY_S}/bin/* || die
-	insinto /usr/$(get_libdir)/${PN}
-	doins kmer/${MY_S}/lib/* || die
-	# Collisions
-	# dolib.a kmer/${MY_S}/lib/* || die
-	insinto /usr/include/${PN}
-	doins kmer/${MY_S}/include/*
-
-	insinto /usr/share/${PN}
-	doins -r ${MY_S}/bin/spec
-	insinto /usr/share/${PN}/lib
-	doins -r ${MY_S}/bin/TIGR || die
-	rm -rf ${MY_S}/bin/{TIGR,spec}
-	dobin ${MY_S}/bin/* || die
-	dolib.a ${MY_S}/lib/* || die
-	dodoc README
-}