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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2012-02-08 00:44:33 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2012-02-08 00:44:33 +0100 |
| commit | 11ae7cf4d443b53e4a1f90391c0a743ed5698a6a (patch) | |
| tree | 946af63ea9cf05379607a74b427018afc0288c5a /sci-biology | |
| parent | sci-biology/apollo: new package (diff) | |
| download | sci-11ae7cf4d443b53e4a1f90391c0a743ed5698a6a.tar.gz sci-11ae7cf4d443b53e4a1f90391c0a743ed5698a6a.tar.bz2 sci-11ae7cf4d443b53e4a1f90391c0a743ed5698a6a.zip | |
sci-biology/artemis: adjust ebuild based on upstream providing a Makefile
(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/artemis/ChangeLog | 4 | ||||
| -rw-r--r-- | sci-biology/artemis/artemis-9999.ebuild | 8 |
2 files changed, 10 insertions, 2 deletions
diff --git a/sci-biology/artemis/ChangeLog b/sci-biology/artemis/ChangeLog index 8a33496fc..a87b1e41d 100644 --- a/sci-biology/artemis/ChangeLog +++ b/sci-biology/artemis/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 07 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + artemis-9999.ebuild: + adjust ebuild based on upstream providing a Makefile + *artemis-9999 (08 Jan 2012) 08 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> diff --git a/sci-biology/artemis/artemis-9999.ebuild b/sci-biology/artemis/artemis-9999.ebuild index ff8d52d17..4739ad89f 100644 --- a/sci-biology/artemis/artemis-9999.ebuild +++ b/sci-biology/artemis/artemis-9999.ebuild @@ -24,16 +24,20 @@ SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" +# uses its own BamView DEPEND="sci-biology/samtools - sci-biology/bamview >=virtual/jdk-1.5 >=dev-java/sun-jdk-1.5 dev-java/ant-core" RDEPEND="${DEPEND} >=virtual/jre-1.5" +# http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00551.html +# http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00561.html +# http://gmod.org/wiki/Artemis-Chado_Integration_Tutorial src_compile() { - ant compile || die + emake || die + # ant compile || die einfo "Need to figure out where does the GeneBuilder application come from so that one could use Chado for automated gene prediction pipeline" } |